View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14535_low_4 (Length: 412)

Name: NF14535_low_4
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14535_low_4
NF14535_low_4
[»] chr4 (3 HSPs)
chr4 (283-382)||(49223573-49223672)
chr4 (18-81)||(49223434-49223497)
chr4 (194-248)||(49223494-49223548)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 49223573 - 49223672
Alignment:
Q  283 ggtgtattggtattgcaaaattacaaataatttgaaacataaaaatattctaaataacacacataatgagacaaagagaataattctcactattggcaag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49223573 ggtgtattggtattgcaaaattacaaataatttgaaacataaaaatattctaaataacacacataatgagacaaagagaataattctcactattggcaag 49223672  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 49223434 - 49223497
Alignment:
Q  18 aaattaattgcaatttgataaaaacaattaatatcaatgagaataaggtcttaaaatatggtgg 81  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49223434 aaattaattgcaagttgataaaaacaattaatatcaatgagaacaaggtcttaaaatatggtgg 49223497  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 49223494 - 49223548
Alignment:
Q  194 gtggagaaagcaaagctgtacgtagaaatcaaatggagaattggcttcttacatt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49223494 gtggagaaagcaaagctgtacgtagaaatcaaatggagaattggcttcttacatt 49223548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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