View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14535_low_5 (Length: 374)
Name: NF14535_low_5
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14535_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 35628673 - 35628300
Alignment:
| Q |
1 |
ttttagctctaaccccagttgaatggtttcaatatgtaatttcctcaacagcccaaatgagaaagagacaggattgaaattttgaaataaatacaaagaa |
100 |
Q |
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| T |
35628673 |
ttttagctctaaccccagttgaatggtttcaatatgtaatttcctcagcagcccaaatgagaaagagacaagattgaaattttgaaataaatacaaagaa |
35628574 |
T |
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| Q |
101 |
ttcaacgttgcccttgaaagaagaaaaagattgccaaacttagaattataaagtaaaacaatgaatgtccaaaggattattcaagtggtatgtgttagta |
200 |
Q |
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| T |
35628573 |
ttcaacgttgcccttgaaagaagaaaaagattgccaaacttagaattataaagtaaaacaatgaatatccaaaggattattcaagtggtatgtgttagta |
35628474 |
T |
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| Q |
201 |
catcaaaaaagtattttttaactaacaagttcaagatttgatctctgaggctaaccaatcttcttcaccctaacaaataaattactaataatcggcctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35628473 |
catcaaaaaagtattttttaactaacaagttcaagatttgatctctgaggctaaccaatcttcttcaccctaacaaataaattactaataatctgcctat |
35628374 |
T |
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| Q |
301 |
nnnnnnnnnnnnnnnnnnnnnnnntacataaactatactagggacttggattaattgtctcactctttcatagt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35628373 |
aaaacaaacaagaaaaacaaaaactacataaactatactagggacttggattaattgtctcactctttcatagt |
35628300 |
T |
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