View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14535_low_6 (Length: 321)
Name: NF14535_low_6
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14535_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 30943239 - 30942946
Alignment:
| Q |
20 |
ctatacacgtctaaaaccaacattacgtttgagcggaactgaactcggatttcttaagcaaggtctctggtttgagtcttctcgatnnnnnnngtggttg |
119 |
Q |
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| T |
30943239 |
ctatacacgtctaaaaccaacattacgttcgagtggaactgaactcggatttcttaagcaaggtctctggtttgagtcttctcgataaaaaaagtggtt- |
30943141 |
T |
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| Q |
120 |
agaggagagatcctgctaaaggtgttcggcgaggtctgactaaatatttctcatagacaattttggaatttcctttttgaaaagcacacaccaaaatgat |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30943140 |
agaggagagatcctgctaaaggtgttcggcaaggtctgaccaaatatttctcatagacaattttggaattccctttttgaaaagcacacaccaaaatgat |
30943041 |
T |
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| Q |
220 |
gtgcatgtttctctagtgtaatttgtctatc---tattttcnnnnnnnnngtccatgcatctatttagaaaacatgtttgatggtctctgctcct |
311 |
Q |
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||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30943040 |
gtgtatgtttctctagtgtaatttgtctatcaatttttttttttttttttgtccatgcatctatttagaaaacatgtttgatggtctctgatcct |
30942946 |
T |
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