View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14535_low_7 (Length: 302)
Name: NF14535_low_7
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14535_low_7 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0102 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 35106 - 35358
Alignment:
| Q |
35 |
aaaactagagtagtaggtgaggcagaggccttccaacctaattacactaaggtgatacctgaactttttatagataacaatctcaacaaaaatacacctt |
134 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106 |
aaaactagaatagtaggtcaggcagaggccttccaacctaatgacactaaggtgatacctgaactttttatagataacaatctcaacaaaaatacacctt |
35205 |
T |
|
| Q |
135 |
tagatgtcattagtgaggaaggtagaatacattgcaatacaatgcttgaaaacatgttgaataaatactggttcaaacattcgattaccaatacctatca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
35206 |
tagatgtcattagtgaggaaggtagaatacattgcaatacaatgcttgaaaacatgttgaataaatacgggttcaaacattcaattaccaatacctatca |
35305 |
T |
|
| Q |
235 |
ttctactaagtctaaagttaagcaatggaagtgctataaaactcagaagagaa |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35306 |
ttctacaaagtctaaagttaagcaatggaagtgttataaaactcagaagagaa |
35358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University