View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14536_high_1 (Length: 1013)

Name: NF14536_high_1
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14536_high_1
NF14536_high_1
[»] chr2 (2 HSPs)
chr2 (13-894)||(42899010-42899912)
chr2 (886-994)||(42900836-42900944)
[»] chr8 (1 HSPs)
chr8 (266-315)||(5787617-5787666)
[»] chr1 (1 HSPs)
chr1 (252-315)||(36990837-36990900)


Alignment Details
Target: chr2 (Bit Score: 785; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 13 - 894
Target Start/End: Original strand, 42899010 - 42899912
Alignment:
Q  13 tcatcacaacatgaacaatctccaaacacaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagta 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899010 tcatcacaacatgaacaatctccaaactcaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagta 42899109  T
Q  113 caaataccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899110 caaataccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaa 42899209  T
Q  213 atggtcctactcctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgc 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899210 atggtcctacttctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgc 42899309  T
Q  313 aaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899310 aaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaat 42899409  T
Q  413 ggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899410 ggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg 42899509  T
Q  513 ctggaaatattcttcattcaaatcaagatcataatatcaatcatgatggtgataatgatattacaaaaacaaccaccaatgatgacga---------tgg 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         |||    
T  42899510 ctggaaatattcttcattcaaatcaagatcataatatcaatcatgatggtgataatgatattccaaaaacaaccaccaatgatgacgatgttgccgctgg 42899609  T
Q  604 aggaaacaatgcatttacaagagatttcttaggtcttaaaccactctctgatagtgatatcctcaccattgctggtatgggaagttgcatgaactcttcc 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42899610 aggaaacaatgcatttacaagagatttcttaggtcttaaaccactctctgatagtgatatcctcaccattgctggtatgggaagttgcatgaacccttcc 42899709  T
Q  704 aactccaatcatcaagaaaaccattcccaaaaaccatgggaaggtaattagtttggtgtatatatctttc------------nnnnnnngtcttcataat 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||    
T  42899710 aactccaatcatcaagaaaaccattcccaaaaaccatgggaaggtaattagtttggtgtatatatctttctttttttgcccttttttttgtcttcataat 42899809  T
Q  792 ttaaactttattttatcctttttgtatgtgaaatactgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttctta 891  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899810 ttaaaatttattttatcctttttgtacgtgaaatactgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttctta 42899909  T
Q  892 tat 894  Q
    |||    
T  42899910 tat 42899912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 886 - 994
Target Start/End: Original strand, 42900836 - 42900944
Alignment:
Q  886 ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt 985  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42900836 ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt 42900935  T
Q  986 gtacataga 994  Q
    |||||||||    
T  42900936 gtacataga 42900944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
Q  266 cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac 315  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  5787666 cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac 5787617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 36990837 - 36990900
Alignment:
Q  252 ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac 315  Q
    ||||| ||||||||||||||||||| || |||||| |||| ||||| ||||| |||||||||||    
T  36990837 ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac 36990900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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