View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_13 (Length: 273)
Name: NF14536_low_13
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 2660587 - 2660830
Alignment:
| Q |
20 |
actcatgtagtacatacttaactaatgcaaccaaccaaacacacatagtaccacctactctgtttccaaaaaataaacatacaacctactccccctgcat |
119 |
Q |
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| T |
2660587 |
actcatgcagtacatacttaaccaatgaaaccaaccaaacacacatagtaccacctactctgtttccaaaaaataaacatacaacctactccccctgcat |
2660686 |
T |
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| Q |
120 |
aaatattcggtttcatttgtagatttgtatcccacaagaactataccaaaacaccactccaatttcacttcactagggtagaatttcttatcttcttcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
2660687 |
aaatattcggtttcatttgtagatttgtatcccacaagaattataccaaaacaccactccaatttcacttcactacggtagagtttcttatcttct---t |
2660783 |
T |
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| Q |
220 |
tttctcacaaattcatcttttagatctaaattctttttcagaattat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2660784 |
tttctcacaaattcatcttttagatctaaattctttttcaaaattat |
2660830 |
T |
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