View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_18 (Length: 227)
Name: NF14536_low_18
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 12049544 - 12049445
Alignment:
| Q |
123 |
agtcaacatttaaaatacattacccacaaagatacagcataaatcaattgtaaaaataataatttgtttttatatcaaaatgtt---atataaatagtat |
219 |
Q |
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| T |
12049544 |
agtcaacatttaaaatacattacccacaaagatacagcataaatcaattgtaaaaa---taatttgtttttatatcaaaatgttaaaatataaatagtat |
12049448 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12049666 - 12049626
Alignment:
| Q |
1 |
caacgatgtcgtcgctctcaccttccccaacaccatcgagg |
41 |
Q |
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| T |
12049666 |
caacgatgtcgtcgctctcaccttccccaacaccatcgagg |
12049626 |
T |
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