View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_19 (Length: 223)
Name: NF14536_low_19
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 35721198 - 35721318
Alignment:
| Q |
88 |
ttaaatggataacataacaattcttaattaccaataatagattaaactattattaagttatgaaaatcttactctctcagtatcttcaaccaattctagt |
187 |
Q |
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| T |
35721198 |
ttaaatggataacataacaattcttaattaccaataatagattaaactattattaagttatgaaaatcttactctctcagtatcttcaaccaattcaagt |
35721297 |
T |
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| Q |
188 |
cacaacttcaactactttcat |
208 |
Q |
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||||||||||||||||||||| |
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| T |
35721298 |
cacaacttcaactactttcat |
35721318 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 35721139 - 35721171
Alignment:
| Q |
29 |
attcaatgttgaatcatttatcttataatattc |
61 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35721139 |
attcaatgttgaatcatttatcttataatattc |
35721171 |
T |
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