View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_2 (Length: 583)
Name: NF14536_low_2
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 4004653 - 4005048
Alignment:
| Q |
1 |
ttgaccattagtgcatttcatatttatttcaatatttgaagtctctccttnnnnnnnnnnnnntcaattcaattcagtggatcatatgatttgtttctaa |
100 |
Q |
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| T |
4004653 |
ttgaccattagtgcatttcatatttatttcaatatttgaagtctctccttaaaaaaccaaaaatcaattcaattcagtggatcatatgatttgtttctaa |
4004752 |
T |
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| Q |
101 |
tggatggatggttacaaaataaaactgaaggaaatcatatcatattattttaactgaaggaaaccacgtttcatttgaagtctttaccactaccattgtc |
200 |
Q |
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| T |
4004753 |
tggatgg----tcacaaaataaaactgaaggaaatcatatcatattattttaactgaaggaaactacgtttcatttgaagtctttaccactaccattgtc |
4004848 |
T |
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| Q |
201 |
accaaacactctccaccaccacagcactattgctcctcttcactatctacttctattgtattctaatttctatgtatgtttgccatgatttggttgacac |
300 |
Q |
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| T |
4004849 |
accaaacactctccaccaccacagcactattgctcctcttcactatctacttctattgcattctcatttctatgtatgtttgccatgatttggttgaaac |
4004948 |
T |
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| Q |
301 |
atcaaagtgtaatttttgcaaaattatgatagctcgttgtacttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
400 |
Q |
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| T |
4004949 |
ttcaaagtgtaatttttgcaaaattatgatagctccttgtgcttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 433 - 566
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
433 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
529 |
Q |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
530 |
nctgcattcaaacatgacctgctcgaattcctacaca |
566 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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