View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_4 (Length: 415)
Name: NF14536_low_4
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 25990533 - 25990918
Alignment:
| Q |
1 |
ttgtgtgtattatggt--ttatttatagcttgacacagggatatataaactaattaactaatcattcctctcaaaatgaagtagttttcaaagcaagagg |
98 |
Q |
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| T |
25990533 |
ttgtgtgtattaaggtgtttatttatagcttggcacagggatatataaactaattaactaatcattcctctcaaaatgaa-tagttttcaaagcaagagg |
25990631 |
T |
|
| Q |
99 |
aatatttgacattgacatattactttcgaaaagtcaaatacgaaataattgattttaatttctgttcaactagaaatttaatacaacatatcttattttc |
198 |
Q |
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| T |
25990632 |
aatatttgacattgacatgttgcttttgaaaagtcaaatacgaaataattgatt--aatttctgttcaactagaagtttaatacaacatatcttattttc |
25990729 |
T |
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| Q |
199 |
ttttcatttttacaatagtttaatagatgagggtgtcattaaaatatagagatggtagtgtgcccattgatggcatgaatggt-gaaaggttttggtttt |
297 |
Q |
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| T |
25990730 |
ttttcatttttacaatagtttaatagatgagggtggcattaaaatatagagagggtagtgtgcccattgatggcatgaatggtggaaaggttttggtttt |
25990829 |
T |
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| Q |
298 |
catgactcaaatacacaagaaggaattggatttattatattcacaagagaaaaagagttagcagcaggatccattgatactcaacgtta |
386 |
Q |
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| T |
25990830 |
catgactcaaatacacaagaaggaattggatgtattatattcacaagagaaaaagagttagcagcaggatccattgatactcaacgtta |
25990918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 25323371 - 25323293
Alignment:
| Q |
40 |
tatataaactaattaactaatcattcctctcaaaatgaagtagttttcaaagcaagaggaatatttgacattgacatatt |
119 |
Q |
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| T |
25323371 |
tatataaactaattaaccaatcattgctctcaaaatgaa-tagttttcaaagtaagaggaatgtttgacattgacatatt |
25323293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 26153064 - 26152986
Alignment:
| Q |
40 |
tatataaactaattaactaatcattcctctcaaaatgaagtagttttcaaagcaagaggaatatttgacattgacatatt |
119 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |
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| T |
26153064 |
tatataaactaattaaccaatcattgctctcaaaatgaa-tagttttcaaagtaagaggaatgtttgacattgacatatt |
26152986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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