View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_6 (Length: 345)
Name: NF14536_low_6
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 11111587 - 11111253
Alignment:
| Q |
1 |
gacatgattaatggtatgtaagcgaagtgacagaaaaa-tttaaaactcacacatacaactgtgaggattcatattcaaacgtagataaaaatgttcagt |
99 |
Q |
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| T |
11111587 |
gacatgattaatggtatgtaagggaaatgataaaaaaaatttaaaactcacacatacaactgtcaggtctcatattcaaacgtagagaaaaatgttcagt |
11111488 |
T |
|
| Q |
100 |
ctatcaatatcaacattgttagttgagtcaattgtcttgcggatttgatgtttttaaactgaaaagtctaaatttgttatgtaaaaatgactaacttgaa |
199 |
Q |
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| T |
11111487 |
ctatcaatatcaacattgttagttgagtcaactgtcttgcggatttgatgtttttaaactgaaaagtctaaatttgttatgtaaaaatgattaacttgaa |
11111388 |
T |
|
| Q |
200 |
gtaaaggatgtaaatgacattttgaaattttaaattaaattaaataactcttgttgtagttttgtct-aaaaaagggttgggaagttcatatc------- |
291 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11111387 |
gtaaaggatgtaaatgacatttcgaaattttaaattaaattaaataactc---ttgtagttttgtctaaaaaaagggttgggaagttcatatcaaaaaaa |
11111291 |
T |
|
| Q |
292 |
-aacaaaaaaaggtgatttttctaacttcaaaaactac |
328 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
11111290 |
aaaaaaaaaaaggtgatttttctaacttcaaaaactac |
11111253 |
T |
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