View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_7 (Length: 335)
Name: NF14536_low_7
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 27 - 332
Target Start/End: Complemental strand, 7766896 - 7766592
Alignment:
| Q |
27 |
gatatgacttcgcaaacttaagtagagaaaagaacatgtacatgtgttacattttaacnnnnnnnntctatcttattttcgatagctttatgcattgaat |
126 |
Q |
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| T |
7766896 |
gatatgacttcgcaaacttaagtatagaaaagaacatgtacatgtgttacattttaacaaaaaaa-tctatcttattttcgatagctttatgcattgaat |
7766798 |
T |
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| Q |
127 |
gaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcagatgtgcnnnnnnntcttgccagtgaatatttacattatacattaaatgaagtg |
226 |
Q |
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| T |
7766797 |
gaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcagatgtgtaaaaaaatcttgccagtgaatatttacattatacattaaatgaagtg |
7766698 |
T |
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| Q |
227 |
ttaaaacttgtaactgaaacactatttaggatcatggttgaaaacagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatattctt |
326 |
Q |
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| T |
7766697 |
ttaaaacttgtaactgaaacactatttaggatcatagttgaaaacagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatatcctt |
7766598 |
T |
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| Q |
327 |
cgacat |
332 |
Q |
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| T |
7766597 |
caacat |
7766592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 7787806 - 7787725
Alignment:
| Q |
93 |
tctatcttattttcgatagctttatgcattgaatgaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcaga |
174 |
Q |
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| T |
7787806 |
tctatcttatttttgttagctttatgcattgaatgaagtctcaagacttcaagttgggttcaatttaaacatgcattccaga |
7787725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 7766932 - 7766899
Alignment:
| Q |
17 |
atttcctattgatatgacttcgcaaacttaagta |
50 |
Q |
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| T |
7766932 |
atttcctattgatatgacttcgcaaacttaagta |
7766899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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