View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14536_low_8 (Length: 308)
Name: NF14536_low_8
Description: NF14536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14536_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 13317008 - 13317281
Alignment:
| Q |
16 |
atattttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcatcaaatatacgat |
115 |
Q |
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| T |
13317008 |
atattttggaaatgcaagttgaaatcaagccatttataagaaacttccaaattgaaagaaaagtcgcctccttcaacaatgttttcatcaaatatacgat |
13317107 |
T |
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| Q |
116 |
gataaaaatcaacatccactaaaatacgagcaggatgtctgaagaatctatttttagtagcagtatcaataattattggagtacctattgccctagcaat |
215 |
Q |
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| T |
13317108 |
gataaaaatcaacatccactaaaatacgagcaagatgtctgaagaatctatttttagtagcagtatcaataattagaagagtacttattgccctagcaat |
13317207 |
T |
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| Q |
216 |
tttgacaagagtttgattacgctaatattcctaaggtagctccataagttttatccaaacttgggcatgcgttt |
289 |
Q |
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| T |
13317208 |
tttgagaagagtttgattacgctaatattcctaaggtagctccataggttttatccaaacttggacttgcgttt |
13317281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 13308271 - 13307992
Alignment:
| Q |
4 |
gtgaaatgaactatattttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcat |
103 |
Q |
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| T |
13308271 |
gtgacatgacctatattttggcaatgcaagtagaaatcaagtcatttttaagcaactttcaaattgaaagcaaag--gtctccttcaaccaagttttcat |
13308174 |
T |
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| Q |
104 |
caaatatacgatgataaaaatcaacatccactaaaatacgagcaggatgtctgaagaatctatttttagtagcagtatcaataattattggagtacctat |
203 |
Q |
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| T |
13308173 |
caaatatacgacgagaaaaattaacatccactaaaatacgagcatgatgtctgaagaatctacatttagtagcagtatcaataactagagaagtacttat |
13308074 |
T |
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| Q |
204 |
tgccctagcaattttgacaagagtttgattacgctaatattcctaaggtagctccataagttttatccaaacttgggcatgc |
285 |
Q |
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| T |
13308073 |
tgccctagcaattttgagaagagtttgattacgctaatatttctgaggtagctccataagtcttatccaaacatgggcatgc |
13307992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 13303684 - 13303554
Alignment:
| Q |
4 |
gtgaaatgaactatattttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcat |
103 |
Q |
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| T |
13303684 |
gtgacatgacctatattttggcaatgcaagtagaaatcaagccatttatcagcaacttccaaattgaaagcaaagttgttaccttcaaccaagtttttat |
13303585 |
T |
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| Q |
104 |
caaatatacgatgataaaaatcaacatccac |
134 |
Q |
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| T |
13303584 |
caaatatatgacaagaaaaatcaacatccac |
13303554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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