View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14537_high_1 (Length: 651)
Name: NF14537_high_1
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14537_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 9 - 638
Target Start/End: Complemental strand, 10066003 - 10065374
Alignment:
| Q |
9 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10066003 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
10065904 |
T |
|
| Q |
109 |
gcttagatttacttaaaaaagtgtgtaacatacagagtaatctcatctttcacttgattttttctttgactacttaactatacttgtttacatgtgatga |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10065903 |
gcttagatttacttaaaaaagtgtgtatcatacagagtaatctcatctttcacttgattttttctttaactacttaactatacttgtttacatgtgatga |
10065804 |
T |
|
| Q |
209 |
taggtgccaattttcggcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtg |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065803 |
taggtgccaattttcagcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtg |
10065704 |
T |
|
| Q |
309 |
aaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065703 |
aaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaact |
10065604 |
T |
|
| Q |
409 |
caaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactatt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10065603 |
caaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactatt |
10065504 |
T |
|
| Q |
509 |
acggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttca |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065503 |
acggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttca |
10065404 |
T |
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| Q |
609 |
ggcaaggcttgatatgttttttcacctttg |
638 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10065403 |
ggcaaggcttgatatgttttttcacctttg |
10065374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 242 - 623
Target Start/End: Original strand, 48466125 - 48466506
Alignment:
| Q |
242 |
ttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatca |
341 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || || ||||| ||||| || | | ||||||| |||| |||||||| || || ||||| ||||| | |
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| T |
48466125 |
ttgttggatgcaatgtgtgatagactgaagccagttctgtatacagagaagagctgcattgttcgcgaagaagatccagttgatgagatgcttttcatta |
48466224 |
T |
|
| Q |
342 |
tgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttct |
441 |
Q |
| |
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|||| |||||| | || || |||||||||||||||||||||||||| ||||| || | | |||||||||||||||||||||| ||| | |
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| T |
48466225 |
tgcgaggaaaagtcgctaccatgacaacaaatggtggaagaactggtttcttcaactcattatttctaatgcctggtgatttttgtggagaggaactttt |
48466324 |
T |
|
| Q |
442 |
aacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgat |
541 |
Q |
| |
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||||||||| |||||||| | |||| || || |||||| ||||||||| ||||| |||||||| | ||||||||||| ||||| || | | |||| |
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| T |
48466325 |
aacatgggctttggatccaaactcctcctcgaatctacctacttcaactagaacagtagaaactatatcagaagttgaagcatttgcactcaaggctgat |
48466424 |
T |
|
| Q |
542 |
gacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatat |
623 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| | |||||||||| |
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|
| T |
48466425 |
gacttgaagtttgttgcttcccaatttagacgtcttatcaacagcaaacaactccaacacactttcaggtatggcttgatat |
48466506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 48465865 - 48465987
Alignment:
| Q |
9 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | | ||||||| |
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| T |
48465865 |
tatgaacaatacaaatggcaagaaaatagaggtgttgaagaagagactttaattcacaacctccctaaagatctcagaagagacataaagcgtcatcttt |
48465964 |
T |
|
| Q |
109 |
gcttagatttacttaaaaaagtg |
131 |
Q |
| |
|
|||||| |||| | ||||||||| |
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| T |
48465965 |
gcttagctttagtaaaaaaagtg |
48465987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 300 - 460
Target Start/End: Original strand, 41395665 - 41395825
Alignment:
| Q |
300 |
ttgttcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactc |
399 |
Q |
| |
|
||||||| ||||| ||||| || || || ||||||||||| |||||||||||| | ||| | || ||||| ||||||||||| |||||||| ||||| |
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| T |
41395665 |
ttgttcgcgaaggagatcctgttgatgagatgctcttcataatgcgcggaaaattgttgaccgtgacaacaaacggtggaagaacaggtttcttcaactc |
41395764 |
T |
|
| Q |
400 |
gaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcct |
460 |
Q |
| |
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| |||||||||||||| || ||||||||||||||||| |||||||| || |||||| |
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|
| T |
41395765 |
tgaatacctcaaggctggtgacttctgtggagaggagcttctcacatgggcattagatcct |
41395825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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