View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14537_high_8 (Length: 227)
Name: NF14537_high_8
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14537_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 1048094 - 1048221
Alignment:
| Q |
55 |
ttagatgcaagttatattttgtgttaattcatgaaatagttgtaagttatgaagctcaaatggttaattctcgtcttaaatatatgcnnnnnnnnnngtc |
154 |
Q |
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| T |
1048094 |
ttagatgcaagttatattttgtgttaattcatgaaatagttgtaagttatgaagctcaaatgattaattctcgtcttaaatataagc-----aaaaagtc |
1048188 |
T |
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| Q |
155 |
aattgcatttgattcaaatttcaatcaagtaca |
187 |
Q |
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| T |
1048189 |
aattgcatttgattcaaatttcgatcaagtaca |
1048221 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 1040576 - 1040659
Alignment:
| Q |
57 |
agatgcaagttatat--tttgtgttaattcatgaaatagttgtaagttatgaagctcaaatggttaattctcgtcttaaatata |
138 |
Q |
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| T |
1040576 |
agatgcaatttatatgttttatgttaattcatgagataattgtgaattatgaagctcaaataattaatgctcgtcttaaatata |
1040659 |
T |
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