View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14537_low_12 (Length: 229)

Name: NF14537_low_12
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14537_low_12
NF14537_low_12
[»] chr4 (51 HSPs)
chr4 (15-229)||(27460485-27460699)
chr4 (28-229)||(27476707-27476908)
chr4 (17-178)||(27473901-27474062)
chr4 (17-224)||(27469469-27469676)
chr4 (17-198)||(27466830-27467011)
chr4 (17-229)||(27479910-27480122)
chr4 (73-229)||(27502054-27502210)
chr4 (17-197)||(27516560-27516740)
chr4 (17-217)||(27505633-27505833)
chr4 (17-216)||(27523335-27523534)
chr4 (17-224)||(27486992-27487202)
chr4 (19-229)||(27526031-27526241)
chr4 (17-229)||(27513695-27513907)
chr4 (19-178)||(27498426-27498585)
chr4 (19-173)||(27557500-27557654)
chr4 (17-164)||(27500322-27500469)
chr4 (19-170)||(27444772-27444923)
chr4 (28-164)||(27431132-27431268)
chr4 (19-173)||(27501328-27501482)
chr4 (17-146)||(27502809-27502938)
chr4 (76-170)||(27554377-27554471)
chr4 (35-155)||(27415648-27415768)
chr4 (39-148)||(27425843-27425952)
chr4 (116-161)||(27495644-27495689)
chr4 (31-155)||(27585711-27585835)
chr4 (37-148)||(27412693-27412804)
chr4 (106-155)||(27559233-27559282)
chr4 (31-148)||(27563346-27563463)
chr4 (19-155)||(17970310-17970446)
chr4 (97-148)||(27468327-27468378)
chr4 (97-148)||(27504011-27504062)
chr4 (44-155)||(27514927-27515038)
chr4 (112-155)||(27567359-27567402)
chr4 (104-147)||(27571719-27571762)
chr4 (82-148)||(27420482-27420548)
chr4 (50-148)||(27524566-27524664)
chr4 (70-148)||(27570049-27570127)
chr4 (104-149)||(27411455-27411500)
chr4 (37-149)||(27424513-27424625)
chr4 (104-148)||(27485943-27485987)
chr4 (104-148)||(27506794-27506838)
chr4 (104-155)||(27414297-27414348)
chr4 (104-147)||(27419072-27419115)
chr4 (104-147)||(27478884-27478927)
chr4 (97-144)||(27490049-27490096)
chr4 (111-146)||(27565953-27565988)
chr4 (116-155)||(27600661-27600700)
chr4 (106-164)||(27446245-27446303)
chr4 (97-147)||(27475580-27475630)
chr4 (104-178)||(27507783-27507857)
chr4 (115-155)||(27421924-27421964)
[»] chr5 (4 HSPs)
chr5 (17-210)||(1759257-1759454)
chr5 (19-178)||(1754212-1754370)
chr5 (37-148)||(1756757-1756868)
chr5 (106-155)||(1754786-1754835)
[»] chr3 (11 HSPs)
chr3 (19-148)||(38043914-38044043)
chr3 (111-178)||(50904762-50904829)
chr3 (97-167)||(38024856-38024926)
chr3 (97-167)||(38031308-38031378)
chr3 (97-182)||(38028732-38028817)
chr3 (97-155)||(50910049-50910107)
chr3 (97-182)||(38040047-38040132)
chr3 (104-165)||(48840695-48840756)
chr3 (19-164)||(55084797-55084942)
chr3 (97-182)||(38036759-38036844)
chr3 (97-154)||(50911863-50911920)
[»] chr8 (2 HSPs)
chr8 (97-182)||(21604720-21604805)
chr8 (97-167)||(21607277-21607347)
[»] chr2 (1 HSPs)
chr2 (19-155)||(3073580-3073716)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 27460485 - 27460699
Alignment:
Q  15 cataggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27460485 cataggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatat 27460584  T
Q  115 gatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcatagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27460585 gatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcatagg 27460684  T
Q  215 actgacgtagttatt 229  Q
    |||||||||||||||    
T  27460685 actgacgtagttatt 27460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 27476707 - 27476908
Alignment:
Q  28 atgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgg 127  Q
    |||||| | |||||||| ||| ||||||| ||||| ||||  |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27476707 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaatttgaatatgatcatccaatgg 27476806  T
Q  128 gtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggactgacgtagtta 227  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  27476807 gtggtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaattagctctttgaagatatcataggactgacgtagata 27476906  T
Q  228 tt 229  Q
    ||    
T  27476907 tt 27476908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 27473901 - 27474062
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27473901 taggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatga 27474000  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 178  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||| ||||    
T  27474001 tcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctc 27474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27469469 - 27469676
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | ||||||||||||||||||||||||||||||| |||||| |||||| || ||||||||  ||| ||| |||||||||||||    
T  27469469 taggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaatttgaatatga 27469568  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggac 216  Q
     ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  27469569 acatccaatgggtggtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaattagctctttgaagatatcataggac 27469668  T
Q  217 tgacgtag 224  Q
    ||||||||    
T  27469669 tgacgtag 27469676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 27466830 - 27467011
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  27466830 taggaaaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaattattccaagaactgctgagccaaagtgaggaacaatttgaatatga 27466929  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctct 198  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||| || ||||| |||  ||| | ||||| |||||||    
T  27466930 tcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaagtagctct 27467011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 27479910 - 27480122
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | |||||||| ||| ||||||| ||||| |||| |||||||||| | ||| ||| ||||  ||||||| |||||||||||||    
T  27479910 taggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatga 27480009  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||| | |||||||| || |||||||||||||||||||    
T  27480010 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaattacctttttgaagatatcataggac 27480109  T
Q  217 tgacgtagttatt 229  Q
    |||||||||||||    
T  27480110 tgacgtagttatt 27480122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 27502210 - 27502054
Alignment:
Q  73 ttccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatca 172  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  27502210 ttccaagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatatca 27502111  T
Q  173 cctctcacttaatttgaattagctctttgaagatatcataggactgacgtagttatt 229  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  27502110 cctctcacttaaattgaattagctctttgaagatatcataggactgacgtagatatt 27502054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 27516740 - 27516560
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||| |||||||||||||    
T  27516740 taggaaaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatga 27516641  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctc 197  Q
     ||||||||||| |||||||| |||||||||| ||||||  ||||||| |||||||| ||| |||| | ||||| ||||||    
T  27516640 ccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaagtagctc 27516560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 27505833 - 27505633
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | |||||||| ||| ||||||| ||||| ||||  ||||||||||||||| ||| ||||  ||||||| |||||||||||||    
T  27505833 taggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatga 27505734  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggac 216  Q
     |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||  |||||||| | |||||||||||||||||||||||||| ||||    
T  27505733 ccatccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaattagctctttgaagatatcattggac 27505634  T
Q  217 t 217  Q
    |    
T  27505633 t 27505633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 27523534 - 27523335
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||| ||||| ||   |||||| |||||||||||||    
T  27523534 taggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaatatga 27523435  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggac 216  Q
     ||||||||||||||||| || |||||||||| ||||||||||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||    
T  27523434 ccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcataggac 27523335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27486992 - 27487202
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | |||||||||||| ||||||| || || |||  ||| || ||||||||| ||| ||||  ||| ||| |||||||||||||    
T  27486992 taggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatga 27487091  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttga---attagctctttgaagatatcatag 213  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||| ||||| || |||||||| | ||||   ||||| ||||||||||||||||||    
T  27487092 tcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatcatag 27487191  T
Q  214 gactgacgtag 224  Q
    |||||||||||    
T  27487192 gactgacgtag 27487202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 27526241 - 27526031
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||| | |||||| | |||||||| ||| ||||||| ||||| ||||  ||||||||||||||| ||||||||  ||||||| |||||||||||||||    
T  27526241 ggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatc 27526142  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggactg 218  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||| || ||||| ||||  || | ||||||| |||||  ||||||| |||| || ||    
T  27526141 atccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaattggctctcggaagataccataagattg 27526042  T
Q  219 acgtagttatt 229  Q
    |||||| ||||    
T  27526041 acgtagatatt 27526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 27513907 - 27513695
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | ||||||||||| |||||||| ||||| ||||  || |||||||||||| ||| ||||  ||| ||| ||| |||||||||    
T  27513907 taggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatga 27513808  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcataggac 216  Q
    ||||||||||||||||||||| |||||||||||||||||  | ||||| |||||||| |||| ||| | |||||| |  ||||||||| || ||||| |     
T  27513807 tcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatcaaatctttgaagttagcatagtat 27513708  T
Q  217 tgacgtagttatt 229  Q
    |||||||| ||||    
T  27513707 tgacgtagatatt 27513695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 27498426 - 27498585
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||  | |||||||||||||||||||| ||||| |||  ||| |||||||| ||| ||| ||||   |||||| |||| ||||||||||    
T  27498426 ggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatc 27498525  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 178  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||    
T  27498526 atccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 27557500 - 27557654
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||||| ||||||||||| || ||||| || || |||  |||||| |||||||||||||  |||  ||||||| |||||||||||| ||    
T  27557500 ggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttc 27557599  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcac 173  Q
    ||||||||||||||||||| ||||| |||||||||||  ||||||| ||||||||    
T  27557600 atccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcac 27557654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 27500469 - 27500322
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| |||||||||||||||||||||| || || ||||  ||||||||||||||||||||||||  ||| ||| | || | ||||||    
T  27500469 taggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatga 27500370  T
Q  117 tcatccaatgggtggtctcaccattccttgcagagaagacattttctt 164  Q
     ||||||||||||||  |||| |||||||||||||||||| |||||||    
T  27500369 ccatccaatgggtggcatcactattccttgcagagaagaccttttctt 27500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 27444923 - 27444772
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  |||   |||||| |||| | |||||| |    
T  27444923 ggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgacc 27444824  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 170  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  27444823 atccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 27444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 27431268 - 27431132
Alignment:
Q  28 atgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgg 127  Q
    |||||||| ||||||||||| |||||||| ||||| |||   ||||| ||||||||| |||  |||   |||||| |||||| |||||| |||||||  |    
T  27431268 atgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccg 27431169  T
Q  128 gtggtctcaccattccttgcagagaagacattttctt 164  Q
    |||||||||| |||||||||||||||||| |||||||    
T  27431168 gtggtctcacaattccttgcagagaagacgttttctt 27431132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 27501328 - 27501482
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||  | ||||||||||| |||||||| || || |||  ||  || ||||| ||| ||| ||||   |||||| |||||||||| ||||    
T  27501328 ggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatc 27501427  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcac 173  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  27501428 atccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcac 27501482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 27502938 - 27502809
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatga 116  Q
    |||||||| | |||||| | |||||||| || || ||||||||||| ||||  ||||| ||||| ||||||||||||  || |||| |||||| ||||||    
T  27502938 taggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatga 27502839  T
Q  117 tcatccaatgggtggtctcaccattccttg 146  Q
     ||||||||||||||||| || ||||||||    
T  27502838 ccatccaatgggtggtcttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 27554377 - 27554471
Alignment:
Q  76 caagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 170  Q
    |||||||||||||  |||  ||||||| |||||| |||||||||||||| |||| ||||||| |||||||| ||||||||| ||||||| |||||    
T  27554377 caagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatat 27554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 27415648 - 27415768
Alignment:
Q  35 gatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtct 134  Q
    ||||||||||||| |||||||| ||||| |||  ||| || ||||| ||| |||| |||  ||||||| | |||| |||||||||| | |||||||| ||    
T  27415648 gatttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcct 27415747  T
Q  135 caccattccttgcagagaaga 155  Q
    |||||||||||||| ||||||    
T  27415748 caccattccttgcacagaaga 27415768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 27425843 - 27425952
Alignment:
Q  39 tgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcacc 138  Q
    ||||||||| |||||||| ||||| |||  |||||| ||||| ||  |||| |||  ||||||| | |||| |||||||||||| |||||||| ||||||    
T  27425843 tgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcacc 27425942  T
Q  139 attccttgca 148  Q
    ||||||||||    
T  27425943 attccttgca 27425952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 27495644 - 27495689
Alignment:
Q  116 atcatccaatgggtggtctcaccattccttgcagagaagacatttt 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  27495644 atcatccaatgggtggtctcaccattccttgcagagaagatatttt 27495689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 27585711 - 27585835
Alignment:
Q  31 aagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtg 130  Q
    |||||||||||||||||  ||||||| ||||| |||  ||  || ||||| ||| |||| |||   || ||| | |||| |||||||||||||||||| |    
T  27585711 aagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggag 27585810  T
Q  131 gtctcaccattccttgcagagaaga 155  Q
    |||||||||||||||||| ||||||    
T  27585811 gtctcaccattccttgcacagaaga 27585835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 27412693 - 27412804
Alignment:
Q  37 tttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctca 136  Q
    ||||||||||| |||||||| ||||| |||  || ||| ||||| ||  |||| |||  ||| ||| | |||| ||||||||||||||||||||| ||||    
T  27412693 tttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctca 27412792  T
Q  137 ccattccttgca 148  Q
    ||||||||||||    
T  27412793 ccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 27559282 - 27559233
Alignment:
Q  106 tttgaatatgatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  27559282 tttggatatgatcatccaatgggtggtctcacaattccttgcagtgaaga 27559233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 27563463 - 27563346
Alignment:
Q  31 aagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtg 130  Q
    |||||| ||||||||||  ||||||| ||||| |||| ||  || ||||| |||||||| |||   || ||| | |||| ||||||||||||||||||||    
T  27563463 aagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtg 27563364  T
Q  131 gtctcaccattccttgca 148  Q
    | ||||| ||||||||||    
T  27563363 gcctcacaattccttgca 27563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 17970310 - 17970446
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||| | |||||||||||||  ||||| ||||| ||||  ||||| ||| | |||||||| |     |||||| |||| | ||| ||||    
T  17970310 ggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatc 17970409  T
Q  119 atccaatgggtggtctcaccattccttgcagagaaga 155  Q
    ||||||||||||| ||||| |||||||||| ||||||    
T  17970410 atccaatgggtggcctcacaattccttgcacagaaga 17970446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 27468378 - 27468327
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    |||||| |||||| |||||||||||| |||||||| ||||||||||||||||    
T  27468378 gaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 27504011 - 27504062
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    |||||| | |||| ||||||||||||||||||||| ||||||||||||||||    
T  27504011 gaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 27514927 - 27515038
Alignment:
Q  44 tccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattcc 143  Q
    ||||| ||||||| ||||| |||   ||||| ||||| ||| |||| |||   |||||| |||||| |||||||||||| |||||||| |||||||||||    
T  27514927 tccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattcc 27515026  T
Q  144 ttgcagagaaga 155  Q
    ||| | ||||||    
T  27515027 ttgtacagaaga 27515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 27567359 - 27567402
Alignment:
Q  112 tatgatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  27567359 tatgatcatccaatgggtggtctcacaattccttgcagcgaaga 27567402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 27571719 - 27571762
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 147  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  27571719 aatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 27420482 - 27420548
Alignment:
Q  82 ttgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    |||||||| |||  ||||||| | |||| |||||||||||| |||||||| ||||||||||||||||    
T  27420482 ttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27420548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 27524566 - 27524664
Alignment:
Q  50 tatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    ||||||||||||| |||   ||||| ||||| ||| |||  |||  ||||||| | |||| ||||||||||||||||||||| ||||||||||| ||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 27570127 - 27570049
Alignment:
Q  70 tcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    ||||| ||||| |||||||| |||  ||||||| | || | |||||||||||| |||||||| ||||||||||||||||    
T  27570127 tcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgca 27570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 27411500 - 27411455
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgcag 149  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27411500 aatttggatatgatcatcctatgggtggtctcacaattccttgcag 27411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 27424625 - 27424513
Alignment:
Q  37 tttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctca 136  Q
    |||||||| ||  ||||||| ||||| |||   ||||| ||||||||||| |  |||  ||| ||| ||| || |||||||||||||||||||||||| |    
T  27424625 tttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtctta 27424526  T
Q  137 ccattccttgcag 149  Q
    ||||||| |||||    
T  27424525 ccattccgtgcag 27424513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 27485987 - 27485943
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  27485987 aatttggatatgatcatcccatgggtggcctcaccattccttgca 27485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 27506794 - 27506838
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgca 148  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  27506794 aatttggatatgatcatcccatgggtggactcaccattccttgca 27506838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 27414348 - 27414297
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| |||||    
T  27414348 aatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 27419115 - 27419072
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 147  Q
    |||||| |||||||||||||||||||||||| || |||||||||    
T  27419115 aatttggatatgatcatccaatgggtggtcttacaattccttgc 27419072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 27478927 - 27478884
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 147  Q
    |||||| |||||||||||| |||||||| |||||||||||||||    
T  27478927 aatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 27490049 - 27490096
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattcct 144  Q
    |||||| | |||| ||||||||||||||||||||| ||||||||||||    
T  27490049 gaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 27565988 - 27565953
Alignment:
Q  111 atatgatcatccaatgggtggtctcaccattccttg 146  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27565988 atatgatcatccaatgggtggcctcaccattccttg 27565953  T

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Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 27600661 - 27600700
Alignment:
Q  116 atcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  27600661 atcatccaatgggtggtctcacaattccttgcaaagaaga 27600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 27446245 - 27446303
Alignment:
Q  106 tttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttctt 164  Q
    |||||||||||||||| ||||| ||||||| | ||||||||||| |||||  |||||||    
T  27446245 tttgaatatgatcatcgaatggatggtctctcgattccttgcagtgaagatgttttctt 27446303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 27475630 - 27475580
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgc 147  Q
    |||||| | |||| |||||||||||| |||||||| |||||||||||||||    
T  27475630 gaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 27507857 - 27507783
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 178  Q
    |||||| |||||| ||||||||||||||||| || ||||||||   ||||||  ||||||| |||||||| ||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctc 27507783  T

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Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 27421964 - 27421924
Alignment:
Q  115 gatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  27421964 gatcatccaacgggtggtctcacaattccttgcagtgaaga 27421924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 1759257 - 1759454
Alignment:
Q  17 taggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaa---ag-tgaggaaaaatttgaat 112  Q
    |||||||| | |||||| | |||||||| ||| |||||||||| || |||| |||||||||||||||| ||||||||   || ||||||| |||||||||    
T  1759257 taggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaat 1759356  T
Q  113 atgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatca 210  Q
    |  | ||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||| |||||||| | |||||| |||||| |||| ||||||    
T  1759357 acaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagctctctgaaaatatca 1759454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 1754370 - 1754212
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    ||||| || |||||| | |||||||||||  ||||||| ||||| |||   ||||| ||| ||||||| | | ||  ||||||| | |||||||||||||    
T  1754370 ggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatc 1754271  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 178  Q
    |||| |||||||||||||| |||||||| |||||| || ||||||| |||||||| ||||    
T  1754270 atccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctc 1754212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 1756868 - 1756757
Alignment:
Q  37 tttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatcatccaatgggtggtctca 136  Q
    ||||||||||| |||||||| ||||| |||  ||| || ||| | ||| |||| |||  ||| ||| |||||| ||||||||| || |||||||| ||||    
T  1756868 tttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcctca 1756769  T
Q  137 ccattccttgca 148  Q
    ||||||||||||    
T  1756768 ccattccttgca 1756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 1754786 - 1754835
Alignment:
Q  106 tttgaatatgatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||| ||||||||||||||||||||| |||||||||| ||||| ||||||    
T  1754786 tttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 1754835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 38043914 - 38044043
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||| | |||||||||||||| ||||| ||||| ||||  || || ||||| |||||||| |||   |||||| |||||| ||||||||    
T  38043914 ggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatc 38044013  T
Q  119 atccaatgggtggtctcaccattccttgca 148  Q
    |||||||||| || ||||| ||||||||||    
T  38044014 atccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 50904829 - 50904762
Alignment:
Q  111 atatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctc 178  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  |||| ||| ||||||| ||||    
T  50904829 atatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctc 50904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 38024926 - 38024856
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttgga 167  Q
    |||||| |||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||    
T  38024926 gaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatgga 38024856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 38031378 - 38031308
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttgga 167  Q
    |||||| |||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||    
T  38031378 gaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatgga 38031308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 38028817 - 38028732
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 182  Q
    |||||| |||||| |||||| ||||||||||| || ||||| |||||||||| ||||||| |||||||| |||| || ||||||||    
T  38028817 gaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 50910049 - 50910107
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaaga 155  Q
    |||||| |||||| ||||||||||||||||||||| ||||| |||||||||| ||||||    
T  50910049 gaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaaga 50910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 38040132 - 38040047
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 182  Q
    |||||| |||| | |||||| ||||||||||| || ||||| |||||||||| ||||||| |||||||| |||| || ||||||||    
T  38040132 gaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 48840756 - 48840695
Alignment:
Q  104 aatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttg 165  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||| ||||||  ||||||||    
T  48840756 aatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttcttg 48840695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 55084797 - 55084942
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||| | |||||| | |||||||||||||| || || ||||| |||  |||||| ||||| ||| |||| |     |||||| |||||| ||| ||||    
T  55084797 ggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatc 55084896  T
Q  119 atccaatgggtggtctcaccattccttgcagagaagacattttctt 164  Q
    ||||||||||||| ||||| |||||||||| ||||||  |||||||    
T  55084897 atccaatgggtggcctcacaattccttgcacagaagatgttttctt 55084942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 38036844 - 38036759
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 182  Q
    |||||| |||| | |||||| ||||||||||| || ||||| |||||||||| |||| || |||||||| |||| || ||||||||    
T  38036844 gaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctcactt 38036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 50911920 - 50911863
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaag 154  Q
    |||||| |||||| ||||||||| ||||||||||| || || |||||||||| |||||    
T  50911920 gaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 50911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 21604805 - 21604720
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 182  Q
    |||||| |||| | |||||| ||||||||||| || ||||| |||||||||| ||||||| |||||||| |||| || ||||||||    
T  21604805 gaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 21607347 - 21607277
Alignment:
Q  97 gaggaaaaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttgga 167  Q
    |||||| |||||| ||||||||| ||||||||||| |||||  ||||||||| |||||| |||||| ||||    
T  21607347 gaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttcatgga 21607277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 3073580 - 3073716
Alignment:
Q  19 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaaaaatttgaatatgatc 118  Q
    |||||||| |||||| | |||||||||||||  ||||| ||||| ||||  ||||| ||| | |||||||| |     |||||| |||| | ||| ||||    
T  3073580 ggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatc 3073679  T
Q  119 atccaatgggtggtctcaccattccttgcagagaaga 155  Q
    ||||||||||||| ||||| |||||||||| ||||||    
T  3073680 atccaatgggtggcctcacaattccttgcacagaaga 3073716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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