View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14537_low_2 (Length: 490)
Name: NF14537_low_2
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14537_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 20684837 - 20685327
Alignment:
| Q |
14 |
gatacaacaatgtgtgagatctgaatctgtttgtcataaactttgacaacatcattatcgactaaactaaggttcatgcaaatttattggatatgaacgt |
113 |
Q |
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| T |
20684837 |
gatacaacaatgtgtgagatctgaatctgttagtcataaactttgacaacatcattatcgactaaactaaggttcatgcaaatttattggatatgaacgt |
20684936 |
T |
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| Q |
114 |
tggagggacttctagggacgagaatattgagtattgaaataccttcctatgtggagaaagactcaaatg----------aattcattatgtgtcacatta |
203 |
Q |
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| T |
20684937 |
tggagggacttctagagacgagaatattgagtgttgaaataccttcctatgtg----aagactcaaatgtgtttaattgaattcattatgtgtcacatta |
20685032 |
T |
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| Q |
204 |
aataagttacttaattgattattgtattgttttggaagaatgttgattattattattatggataaaatgtggtagtgtgacatatatattcagttgatta |
303 |
Q |
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| T |
20685033 |
aataagttacttaattgattattgtatttttttggaagaatgttgattattattattatggataaaatgtggtagtgtgacatatatattcagttgatta |
20685132 |
T |
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| Q |
304 |
acattgtagtaccacacatacttgttttttgatgatgtttctgaaatgtatgtgta--------tgtaatcatgagacactaattttgcaccagtttcac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||| |
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| T |
20685133 |
acattgtagtaccacacatacttgttttttgatgatgtttctgaaatgtacgtatataagagattgtcatcatgagacactaattttgcaccagtttcac |
20685232 |
T |
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| Q |
396 |
aaaaccaattgttaattgtgatttcgatgaataaacatgttcatatatattaggatgtatttttattttgaaaaaattattgggatgtatttatt |
490 |
Q |
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| T |
20685233 |
aaaaccaattgttaattgtgatttcaatgaataaacatgttcatatatattaggatgtatttttattttgaaaaaattattgggatgtatttatt |
20685327 |
T |
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