View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14537_low_3 (Length: 445)

Name: NF14537_low_3
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14537_low_3
NF14537_low_3
[»] chr4 (3 HSPs)
chr4 (20-341)||(35933332-35933649)
chr4 (337-423)||(35933680-35933766)
chr4 (354-391)||(30070333-30070370)
[»] chr1 (4 HSPs)
chr1 (354-391)||(28870903-28870940)
chr1 (354-391)||(42747733-42747770)
chr1 (354-391)||(32348445-32348482)
chr1 (351-379)||(31795354-31795382)
[»] chr5 (1 HSPs)
chr5 (354-391)||(36909629-36909666)
[»] chr3 (1 HSPs)
chr3 (349-378)||(35682675-35682704)
[»] chr8 (2 HSPs)
chr8 (354-390)||(29861522-29861558)
chr8 (357-393)||(38529628-38529664)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 35933332 - 35933649
Alignment:
Q  20 atgtgacaagaacataagtgcctctgtcaagttatctgtaattaagggaggaaagtaagtaataaatttaaggacctatcttcaaataaaacaagcaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  35933332 atgtgacaagaacataagtgcctctgtcaagttatctgtaattaagggaggaaagt----aataaatttaaggacctatcttcaaataaaacaagcaaat 35933427  T
Q  120 taagaatttaattcgtaaatgcttacattttaattcagatgaagcatcggcgttagctaattttaattgcattgtataattgtatattgctccagtaacg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933428 taagaatttaattcgtaaatgcttacattttaattcagatgaagcatcggcgttagctaattttaattgcattgtataattgtatattgctccagtaacg 35933527  T
Q  220 catctatgcttatgtccataagaatcatgacagtctcctataagaattgcaagaaacattgaattaatttgtgaagtgcatggccacattaagaaatcta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35933528 catctatgcttatgtccataagaatcatgacagtctcctataagaattgcaagaaacattgaattaatttgtgaagtgcatggccacattaagagatcta 35933627  T
Q  320 aggctttatttgccaattttac 341  Q
    ||||||||||||||||||||||    
T  35933628 aggctttatttgccaattttac 35933649  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 35933680 - 35933766
Alignment:
Q  337 tttactctttgatctagttttaccaaacactacaaattcaattcactagcttatctgttatcaggaactttttagcaaacaaagact 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933680 tttactctttgatctagttttaccaaacactacaaattcaattcactagcttatctgttatcaggaactttttagcaaacaaagact 35933766  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 30070333 - 30070370
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttatc 391  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  30070333 ttttaccaaacactacaaattcaattagctagcttatc 30070370  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 28870903 - 28870940
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttatc 391  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28870903 ttttaccaaacactacaaaatcaattcactagcttatc 28870940  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 42747733 - 42747770
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttatc 391  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42747733 ttttaccaaacactacaaattcaattaactagcttatc 42747770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 32348445 - 32348482
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttatc 391  Q
    |||||||||||||||||||||||||  |||||||||||    
T  32348445 ttttaccaaacactacaaattcaatcaactagcttatc 32348482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 31795382 - 31795354
Alignment:
Q  351 tagttttaccaaacactacaaattcaatt 379  Q
    |||||||||||||||||||||||||||||    
T  31795382 tagttttaccaaacactacaaattcaatt 31795354  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 36909629 - 36909666
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttatc 391  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  36909629 ttttatcaaacacttcaaattcaattcactagcttatc 36909666  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 35682675 - 35682704
Alignment:
Q  349 tctagttttaccaaacactacaaattcaat 378  Q
    ||||||||||||||||||||||||||||||    
T  35682675 tctagttttaccaaacactacaaattcaat 35682704  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 29861522 - 29861558
Alignment:
Q  354 ttttaccaaacactacaaattcaattcactagcttat 390  Q
    |||||||||||||||||||||||||  ||||||||||    
T  29861522 ttttaccaaacactacaaattcaatcaactagcttat 29861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 38529664 - 38529628
Alignment:
Q  357 taccaaacactacaaattcaattcactagcttatctg 393  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  38529664 taccaaacactacaaattcaatccaccagcttatctg 38529628  T

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