View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14537_low_4 (Length: 399)
Name: NF14537_low_4
Description: NF14537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14537_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 30140324 - 30140557
Alignment:
| Q |
37 |
tgtaattgataagtgtcaaaactacctaaatttcaatatactatcaacacacttattaacttgtttttgcaagaaatcctatgaaattccaca-tttctt |
135 |
Q |
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| T |
30140324 |
tgtaattgataagtgtcaaaactacctaaatttcaatatactatcaacacacttattaacttgtttttgcaagaaatcctatgaaattccacaatttctt |
30140423 |
T |
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| Q |
136 |
gtaaatattagattgttgaggaaaaagaagggaaatcgaataactaagcgagcgtgaagcaaatcgagtcacaatgattagggtggattgcaagagcgaa |
235 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30140424 |
gtaaatattagattgttgaggaaaaacaagggaaatcgattaactaagctagcgtgaagcaaatcgagtcacaatgattagggtggattgcaagagcgaa |
30140523 |
T |
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| Q |
236 |
ttcactaagtgaaaaccaatactcttagcgattt |
269 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30140524 |
ttcactaagtgaaaaccaatactcttagcgattt |
30140557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 380
Target Start/End: Original strand, 30140545 - 30140637
Alignment:
| Q |
288 |
ctcttagcgatttaaggcagcttcaataaccacgtgtatgagatggaaattactttattttaaagaaagactgattcactaagtaaaaccaca |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
30140545 |
ctcttagcgatttaaggcagcttcaataaccacgtgtatgagatggaaattactttactttaaagaaagactgattccctaagtaaaaccaca |
30140637 |
T |
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