View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14538_high_2 (Length: 335)
Name: NF14538_high_2
Description: NF14538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14538_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 14293670 - 14293989
Alignment:
| Q |
1 |
ataaataagttgaacaataatttgtgcgtaaaaccaaattctaaaatcaagagttatagattctaactttaaataaaatcaatttcggatacaaaatcaa |
100 |
Q |
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| T |
14293670 |
ataaatgagttgaacaataatttatgcgtaaaaccaaattttaaaatcaaaagttatagattctaactttaaataaaatcaatttcggatacaaaatcaa |
14293769 |
T |
|
| Q |
101 |
ttataattgaaagcaatcaaacatatcaaaattaattcaattcgttaaatatcaattttaatatcttaannnnnnnnnnnnnnnnnagtaaagttaagtt |
200 |
Q |
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| T |
14293770 |
ttataattgaaagcaatcaaatatatcaaaattaattcaactcgttaaatatcaattttaatatcttaatttttttttccttttttagtaaagttaagtt |
14293869 |
T |
|
| Q |
201 |
aaactttgcatacactaaattaacttattaaaagtacttgaagccgagtcacatgacattattacacaatattccacttcttacggattatgtctgtcta |
300 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14293870 |
aaactttacatacactaaattaatttattaaaagtacttgaagccgagtcacatggcattattacacaatattccacttcttacgggttatgtctgtcta |
14293969 |
T |
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| Q |
301 |
cttaggtgttggttgctgat |
320 |
Q |
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|||||||||||||||||||| |
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| T |
14293970 |
cttaggtgttggttgctgat |
14293989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 52977061 - 52977104
Alignment:
| Q |
94 |
aaatcaattataattgaaagcaatcaaacatatcaaaattaatt |
137 |
Q |
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| T |
52977061 |
aaatcaattttacttgaaagcaatcaaacatatcaaaattaatt |
52977104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 31494343 - 31494282
Alignment:
| Q |
76 |
aaatcaatttcggatacaaaatcaattataattgaaagcaatcaaacatatcaaaattaatt |
137 |
Q |
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| T |
31494343 |
aaatcaagttcggagataaaattaattatacctaatagcaatcaaacatatcaaaattaatt |
31494282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 46344926 - 46344971
Alignment:
| Q |
92 |
caaaatcaattataattgaaagcaatcaaacatatcaaaattaatt |
137 |
Q |
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| T |
46344926 |
caaaatcaattatacttgaaagcaaccaaacatgtcagaattaatt |
46344971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 56013801 - 56013905
Alignment:
| Q |
19 |
aatttgtgcgtaaaaccaaattctaaaatcaagagttatagattctaactttaaataaaatcaatttcggatacaaaatcaattataattgaaagcaatc |
118 |
Q |
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||||||||||| ||| ||||||||| |||||| | || | |||||| ||||||||| || ||||| ||||||| |||| ||| || |||| | ||||| |
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| T |
56013801 |
aatttgtgcgtgaaaacaaattctagaatcaaaaactaaaaattctatctttaaatagaaacaattctggatacagaatcgattctatttgacaacaatc |
56013900 |
T |
|
| Q |
119 |
aaaca |
123 |
Q |
| |
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||||| |
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|
| T |
56013901 |
aaaca |
56013905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 49504302 - 49504228
Alignment:
| Q |
64 |
taactttaaataaaatcaatttcggatacaaaatcaattataattgaaagcaatcaaacatatcaaaattaattc |
138 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||| || || || ||||||| |||| |||||||||| ||||| |
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| T |
49504302 |
taactttaaataaaattaattttagatacaaaatcatttttattttaaagcaaccaaatatatcaaaatcaattc |
49504228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 54596863 - 54596763
Alignment:
| Q |
37 |
aattctaaaatcaagagttatagattctaactttaaataaaatcaatttcggatacaaaatcaattataattgaaagcaatcaaacatatcaaaattaat |
136 |
Q |
| |
|
||||||||||| || ||||| | |||||||||| ||||||||||| ||| ||| || |||||||| || |||||| ||| ||||||| ||| ||| ||| |
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| T |
54596863 |
aattctaaaattaaaagttacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtcataatcaat |
54596764 |
T |
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| Q |
137 |
t |
137 |
Q |
| |
|
| |
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| T |
54596763 |
t |
54596763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 4382986 - 4382894
Alignment:
| Q |
67 |
ctttaaataaaatcaatttcggatacaaaatcaattataattgaaagcaatcaaacatatcaaaattaattcaattcgttaaatatcaatttt |
159 |
Q |
| |
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|||||| || |||||||||| || |||||||||||||| |||||| |||| ||||||||| |||| ||||| ||| || || ||||||||| |
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| T |
4382986 |
ctttaagtagaatcaatttcagaggcaaaatcaattatatttgaaaacaattaaacatatctaaatcaattctatttatttaaaatcaatttt |
4382894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 33141803 - 33141847
Alignment:
| Q |
93 |
aaaatcaattataattgaaagcaatcaaacatatcaaaattaatt |
137 |
Q |
| |
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||||||||||||| |||| ||||| ||||||||||||||| |||| |
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| T |
33141803 |
aaaatcaattatacttgagagcaaccaaacatatcaaaatcaatt |
33141847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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