View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14538_low_1 (Length: 537)
Name: NF14538_low_1
Description: NF14538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14538_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 5 - 515
Target Start/End: Complemental strand, 16686970 - 16686460
Alignment:
| Q |
5 |
caggaaccatggccactacagtcttttgataactaacgaaaccggtcgtattttctgtcttgtagattccataattagggatcattacactgattatcat |
104 |
Q |
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| T |
16686970 |
caggaaccatggccactacagtcttttgataactaacgaaaccggtcgtattttctgtcttgtagattccataattagggttcattacactgattatcat |
16686871 |
T |
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| Q |
105 |
ggttaaatttacaattgttacaccgggtgtgaaaaattcaaccttatctaggtcaactggatagagatgtacaactgggttcttggcttcaaaggttgtg |
204 |
Q |
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| T |
16686870 |
ggttaaatttacaattgttacaccgggtgtgaaaaattcaaccttatctaggtcaactggatagagatgtacaactgggttcttggcttcaaaggttgtg |
16686771 |
T |
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| Q |
205 |
aaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaaaagactttgaaacatttactaatcatgatttttggttctgtgg |
304 |
Q |
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| T |
16686770 |
aaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaaaagattttgaaacatttactaatcatgatttttggttctgtgg |
16686671 |
T |
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| Q |
305 |
gatatttggtgtaacttaattatgcaatgccaaaggttggtttatgggaaaggtcaagatcaataaagcatggcgacacaagaaattttctctattagat |
404 |
Q |
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| T |
16686670 |
gatatttggtataacttaattatgcaatgccaaaggttggtttatgggaaaggtcaagatcaataaagcatggcgacacaagaaattctctctattagat |
16686571 |
T |
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| Q |
405 |
tctatttctttgtgcaattttttaggacaaggacattgctatttaataatgtggttagttagttttgataactaaaattttgggatttggttggcaaaca |
504 |
Q |
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| T |
16686570 |
tctatttctttgtgcaatttttaaggacaaggacattgctattttataatgtggttagttagttttgataactaaaattttgggatttggttggcaaaca |
16686471 |
T |
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| Q |
505 |
tcagaagcaga |
515 |
Q |
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| T |
16686470 |
tcagaagcaga |
16686460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 16619641 - 16619543
Alignment:
| Q |
166 |
tagagatgtacaactgggttcttggcttcaaaggttgtgaaaactaa---tataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaa |
261 |
Q |
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| T |
16619641 |
tagacatgtacatctgggttcttgggtttaaagattgtgaaaactaaggataaaatcacggtggcaacaatgatcaagaaaattattgacactaacaaa |
16619543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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