View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14539_high_1_N (Length: 572)

Name: NF14539_high_1_N
Description: NF14539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14539_high_1_N
NF14539_high_1_N
[»] chr1 (9 HSPs)
chr1 (12-522)||(47592806-47593323)
chr1 (177-329)||(47607264-47607416)
chr1 (178-302)||(47574583-47574707)
chr1 (187-265)||(47701365-47701443)
chr1 (181-303)||(47627180-47627302)
chr1 (187-265)||(47640635-47640713)
chr1 (187-265)||(47698384-47698462)
chr1 (187-217)||(47758515-47758545)
chr1 (193-265)||(47711623-47711695)
[»] scaffold0074 (1 HSPs)
scaffold0074 (172-299)||(49583-49710)
[»] chr6 (12 HSPs)
chr6 (193-303)||(21968265-21968375)
chr6 (171-299)||(22206807-22206935)
chr6 (193-320)||(22086149-22086276)
chr6 (193-303)||(18991047-18991157)
chr6 (162-298)||(18979664-18979800)
chr6 (172-299)||(18995749-18995876)
chr6 (162-299)||(20236061-20236198)
chr6 (162-299)||(22130045-22130182)
chr6 (162-303)||(20083960-20084101)
chr6 (193-336)||(20233170-20233313)
chr6 (193-336)||(22127154-22127297)
chr6 (194-320)||(24386891-24387017)
[»] scaffold0007 (1 HSPs)
scaffold0007 (162-299)||(7128-7265)
[»] chr8 (6 HSPs)
chr8 (193-334)||(10401678-10401819)
chr8 (181-218)||(23189686-23189723)
chr8 (181-218)||(23182309-23182346)
chr8 (193-256)||(15764411-15764474)
chr8 (192-280)||(15697352-15697440)
chr8 (187-239)||(15799854-15799906)
[»] chr5 (2 HSPs)
chr5 (193-332)||(470074-470213)
chr5 (193-268)||(9102756-9102831)
[»] chr4 (3 HSPs)
chr4 (191-254)||(31733072-31733135)
chr4 (191-254)||(31745973-31746036)
chr4 (184-254)||(31702345-31702415)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 12 - 522
Target Start/End: Complemental strand, 47593323 - 47592806
Alignment:
Q  12 aatatttgagggaagaaaattggatggaaatttttataaggtaaaaa------ttgttatatttatagggacgaaaa-cgtatttaacctnnnnnnngcg 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||      |||||||||||||||||||||||| ||||||||||||       |||    
T  47593323 aatatttgagggaagaaaattggatggaaatttttatagggtaaaaacaagaattgttatatttatagggacgaaaaacgtatttaacctaaaaaaagcg 47593224  T
Q  105 atgtaggaaataattgaaaacttaccttgttcccgcaattttgttggtatgcccacgatcttgatctatttgaacaatcctagccattccaaaatctgat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47593223 atgtaggaaataattgaaaacttaccttgttcccgcaattttgttggtatgtccacgatcttgatctatttgaacaatcctagccattccaaaatctgat 47593124  T
Q  205 attttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaataaagaattccta 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47593123 attttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatattcatgcaaataaagaattccta 47593024  T
Q  305 aagccgttcctcctataattttgtaacgttgatcccagcttaaattttgctgtctagtatctgcacannnnnnnaatgaatgagaaactaacagagatat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  47593023 aagccgttcctcctataattttgtaacgttgatcccagcttaaattttgctgtctagtatctgcacatttttttaatgaatgagaaactaacagagatat 47592924  T
Q  405 gctttgtaatcaaacacttgaattaatttaagtatataatgcatcaagttaaaagcatatgcataacttctgaattactttgataattaactaataaaaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47592923 gctttgtaatcaaacacttgaattaatttaagtatataatgcatcaagttaaaagcatatgcataacttctgaattactttgataattaactaataaaaa 47592824  T
Q  505 aggttgagttgaaatgcc 522  Q
    ||||||||||||||||||    
T  47592823 aggttgagttgaaatgcc 47592806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 47607416 - 47607264
Alignment:
Q  177 aacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacga 276  Q
    |||||| |||||||| ||||||||||| |||||||||||||||| |||||| | || || |||||||||||| ||||| |||||||||||||| || |||    
T  47607416 aacaattctagccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtcga 47607317  T
Q  277 gaatatttatgcaaataaagaattcctaaagccgttcctcctataattttgta 329  Q
    ||||| | ||| |||||||||| ||||||||| ||||||||||| ||||||||    
T  47607316 gaataatcatgtaaataaagaactcctaaagcagttcctcctatgattttgta 47607264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 47574707 - 47574583
Alignment:
Q  178 acaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgag 277  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||  |||| |  || ||||  |||||||| ||||| |||||||| | |||||| ||||    
T  47574707 acaattctagccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgag 47574608  T
Q  278 aatatttatgcaaataaagaattcc 302  Q
    ||| || ||| | ||||||||||||    
T  47574607 aatcttcatggagataaagaattcc 47574583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 47701365 - 47701443
Alignment:
Q  187 gccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 265  Q
    ||||| |||||||||||||||||||||||||| ||||||||||  ||||  ||||| | ||| ||||| ||||||||||    
T  47701365 gccataccaaaatctgatattttaggattcattttttcatccaagagaatgttacttgctttaagatcacgatgtataa 47701443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 47627302 - 47627180
Alignment:
Q  181 atcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaat 280  Q
    ||||| ||||| |||||||| || ||||| ||||||||||| | ||| || |||||||| || ||||| | ||| || |||||||  |||||||||||||    
T  47627302 atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat 47627203  T
Q  281 atttatgcaaataaagaattcct 303  Q
     || ||| |  ||||||||||||    
T  47627202 cttcatgaaggtaaagaattcct 47627180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 47640713 - 47640635
Alignment:
Q  187 gccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 265  Q
    ||||| ||||||||||| || || || |||||||||||||| | ||||||||| || | ||||||||| ||||| ||||    
T  47640713 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 47640635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 47698462 - 47698384
Alignment:
Q  187 gccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 265  Q
    ||||| || ||||| ||||||||||||||||| || ||||| |  |  |||||||||||||||||||| ||||| ||||    
T  47698462 gccatgccgaaatcagatattttaggattcatgttatcatctaacaatacattactaggtttgagatcacgatgaataa 47698384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 47758515 - 47758545
Alignment:
Q  187 gccattccaaaatctgatattttaggattca 217  Q
    |||||||||||||||||||||||||||||||    
T  47758515 gccattccaaaatctgatattttaggattca 47758545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 47711623 - 47711695
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 265  Q
    ||||| |||||||||||||||||||  ||||||||||  ||||  ||||| | ||| ||||| ||||||||||    
T  47711623 ccaaagtctgatattttaggattcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataa 47711695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 49710 - 49583
Alignment:
Q  172 atttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttga 271  Q
    |||| |||||| | |||||  ||||||||||| ||||||||| |||||||||| | || ||||| ||| |||||||||||||||||||||||||||||||    
T  49710 atttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatattttcgttcaatagaatattgctaggtttgagatcccgatgtataactttga 49611  T
Q  272 gacgagaatatttatgcaaataaagaat 299  Q
    | |||||||||| |||||||||||||||    
T  49610 gtcgagaatattcatgcaaataaagaat 49583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 21968265 - 21968375
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||| ||||||||| ||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||| |||||||  | ||||||||    
T  21968265 ccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaat 21968364  T
Q  293 aaagaattcct 303  Q
    |||||||||||    
T  21968365 aaagaattcct 21968375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 22206935 - 22206807
Alignment:
Q  171 tatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttg 270  Q
    ||||| |||||| | |||||  |||||||| || ||||||||| ||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||    
T  22206935 tatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttg 22206836  T
Q  271 agacgagaatatttatgcaaataaagaat 299  Q
    || ||||||| || |||||||||||||||    
T  22206835 agtcgagaattttcatgcaaataaagaat 22206807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 22086149 - 22086276
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||| ||| ||||| ||||||||||||| | ||||| |||||| ||||||||||| ||||||||||||||||| ||||||| || ||||||||    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaat 22086248  T
Q  293 aaagaattcctaaagccgttcctcctat 320  Q
    |||||||||||  |||  ||||||||||    
T  22086249 aaagaattcctccagcaattcctcctat 22086276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 18991047 - 18991157
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||| ||||||||| |||||||||| || | ||||| ||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  18991047 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgttcatgcaaat 18991146  T
Q  293 aaagaattcct 303  Q
    |||||| ||||    
T  18991147 aaagaagtcct 18991157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 18979664 - 18979800
Alignment:
Q  162 atcttgatctatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgt 261  Q
    |||||||  ||||| |||||| | |||||  ||||||||||| ||||||||| |||||||||| || | ||||| ||| |||||||||| ||||||||||    
T  18979664 atcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgacatcccgatgt 18979763  T
Q  262 ataactttgagacgagaatatttatgcaaataaagaa 298  Q
    ||||||||||| ||||||| || ||||||||||||||    
T  18979764 ataactttgagtcgagaatgttcatgcaaataaagaa 18979800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 18995749 - 18995876
Alignment:
Q  172 atttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttga 271  Q
    |||| |||||| | |||||  ||||||||||| ||||||||| |||||||||| |  | ||||| ||| ||||||||||||||||||||||||||||| |    
T  18995749 atttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatattttcgtataatagaatattgctaggtttgagatcccgatgtataactttta 18995848  T
Q  272 gacgagaatatttatgcaaataaagaat 299  Q
    | ||||||| || |||||||||||||||    
T  18995849 gtcgagaatgttcatgcaaataaagaat 18995876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 20236061 - 20236198
Alignment:
Q  162 atcttgatctatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgt 261  Q
    |||||||  ||||| |||||| | |||||  |||||||| || ||||||||| |||||||||| || | ||||| ||| |||||||||||||||||||||    
T  20236061 atcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt 20236160  T
Q  262 ataactttgagacgagaatatttatgcaaataaagaat 299  Q
    ||||||||||| || ||||  | |||||||||||||||    
T  20236161 ataactttgagccgtgaatgatcatgcaaataaagaat 20236198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 22130045 - 22130182
Alignment:
Q  162 atcttgatctatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgt 261  Q
    |||||||  ||||| |||||| | |||||  |||||||| || ||||||||| |||||||||| || | ||||| ||| |||||||||||||||||||||    
T  22130045 atcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt 22130144  T
Q  262 ataactttgagacgagaatatttatgcaaataaagaat 299  Q
    ||||||||||| || ||||  | |||||||||||||||    
T  22130145 ataactttgagccgtgaatgatcatgcaaataaagaat 22130182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 20083960 - 20084101
Alignment:
Q  162 atcttgatctatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgt 261  Q
    |||||||  ||||| |||||| | |||||  ||||||||||| ||||||| | |||||||||| || | ||||| ||| ||||||||||||||||| |||    
T  20083960 atcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagtaatcatattttcgtctaatagaatattgctaggtttgagatcccggtgt 20084059  T
Q  262 ataactttgagacgagaatatttatgcaaataaagaattcct 303  Q
    |||||||| || || |||| || |||||||||||||| ||||    
T  20084060 ataactttcagtcgggaatgttcatgcaaataaagaagtcct 20084101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 20233313 - 20233170
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||||||||| ||| |||| || ||||| | || || ||||||||||||||| || ||||| ||||||||||| ||||||| || ||||||||    
T  20233313 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcgagaatgttcatgcaaat 20233214  T
Q  293 aaagaattcctaaagccgttcctcctataattttgtaacgttga 336  Q
    | |||||||||  |||  |||| | ||||||  |||||||||||    
T  20233213 agagaattccttgagcaattccccttataatactgtaacgttga 20233170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 22127297 - 22127154
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||||||||| ||| |||| || ||||| | || || ||||||||||||||| || ||||| ||||||||||| ||||||| || ||||||||    
T  22127297 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcgagaatgttcatgcaaat 22127198  T
Q  293 aaagaattcctaaagccgttcctcctataattttgtaacgttga 336  Q
    | |||||||||  |||  |||| | ||||||  |||||||||||    
T  22127197 agagaattccttgagcaattccccttataatactgtaacgttga 22127154  T

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Target: chr6; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 24387017 - 24386891
Alignment:
Q  194 caaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaata 293  Q
    |||||| ||| ||||||| | |||||||||| || | ||||| ||| ||||||||||||| ||||||||||||||| || ||||||| || |||||||||    
T  24387017 caaaatatgaaattttagaaatcatattttcgtctaatagaatattgctaggtttgagattccgatgtataactttaagtcgagaatgttcatgcaaata 24386918  T
Q  294 aagaattcctaaagccgttcctcctat 320  Q
    ||||| ||||  |||  ||||||||||    
T  24386917 aagaagtcctcgagcaattcctcctat 24386891  T

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Target: scaffold0007 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 7265 - 7128
Alignment:
Q  162 atcttgatctatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgt 261  Q
    |||||||  ||||| |||||||| |||||  ||||||||||| ||||||||| |||||||||| || | ||||| ||| |||||||||||||||||||||    
T  7265 atcttgacttatttcaacaatccgagccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt 7166  T
Q  262 ataactttgagacgagaatatttatgcaaataaagaat 299  Q
    ||||||||||| || ||||  | |||||||||||||||    
T  7165 ataactttgagtcgtgaatgatcatgcaaataaagaat 7128  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 10401678 - 10401819
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||||||||| ||| ||||||||||||| | || || ||||||||||||||| || || || ||||||||||| ||||||| || ||| ||||    
T  10401678 ccaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataactttgagtcgagaatgttcatgtaaat 10401777  T
Q  293 aaagaattcctaaagccgttcctcctataattttgtaacgtt 334  Q
    | | |||||||  |||  |||||| |||||| ||||||||||    
T  10401778 agataattccttgagcaattcctcttataatattgtaacgtt 10401819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 23189723 - 23189686
Alignment:
Q  181 atcctagccattccaaaatctgatattttaggattcat 218  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23189723 atcctagccattccaaaatctgatattttaggattcat 23189686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 23182346 - 23182309
Alignment:
Q  181 atcctagccattccaaaatctgatattttaggattcat 218  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23182346 atcctagccattccaaaatctgaaattttaggattcat 23182309  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 15764411 - 15764474
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatccc 256  Q
    ||||||||||||||||| |||||||| |  |||||||| |||||||| |||| ||| |||||||    
T  15764411 ccaaaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatccc 15764474  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 15697352 - 15697440
Alignment:
Q  192 tccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaat 280  Q
    |||||||||||||||||| |||||||| |  |||||||| |||||||| || | ||| ||||| | ||| |||||| | || |||||||    
T  15697352 tccaaaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatggataactctaagtcgagaat 15697440  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 15799854 - 15799906
Alignment:
Q  187 gccattccaaaatctgatattttaggattcatattttcatccagtagaacatt 239  Q
    |||| |||||||||||||||||| |||||||| |  |||||||| ||||||||    
T  15799854 gccaatccaaaatctgatatttttggattcatttcatcatccagaagaacatt 15799906  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 470074 - 470213
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatatttatgcaaat 292  Q
    ||||||||||||||||| |||||||| || ||||| |  |  ||||| |||||||||||||| |||||||| ||||| || |  ||||| | ||| || |    
T  470074 ccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactcatgtaagt 470173  T
Q  293 aaagaattcctaaagccgttcctcctataattttgtaacg 332  Q
    |||||||||||   ||  ||||||| |||||||| |||||    
T  470174 aaagaattcctcgtgcaattcctccaataattttataacg 470213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 9102831 - 9102756
Alignment:
Q  193 ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactt 268  Q
    ||||||||| | ||||||||| ||||||||||| | | | ||| |||||||||||||||||| | |||||||||||    
T  9102831 ccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt 9102756  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 31733135 - 31733072
Alignment:
Q  191 ttccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatc 254  Q
    ||||||||||||||||||| ||||||| ||| || || |||| ||||||||| | |||||||||    
T  31733135 ttccaaaatctgatatttttggattcaaattatcgtcgagtaaaacattacttgctttgagatc 31733072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 31746036 - 31745973
Alignment:
Q  191 ttccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatc 254  Q
    ||||||||||||||||||| ||||||| ||| || || |||| ||||||||| | |||||||||    
T  31746036 ttccaaaatctgatatttttggattcaaattatcgtcgagtaaaacattacttgctttgagatc 31745973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 31702415 - 31702345
Alignment:
Q  184 ctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatc 254  Q
    ||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||  | |||||||||    
T  31702415 ctagccaatccaaaatctgatatttttggattcaaagtatcatctagtaaaacattacctgttttgagatc 31702345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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