View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14539_high_4 (Length: 336)

Name: NF14539_high_4
Description: NF14539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14539_high_4
NF14539_high_4
[»] chr3 (4 HSPs)
chr3 (1-324)||(46103001-46103322)
chr3 (169-324)||(46118589-46118744)
chr3 (48-166)||(9261337-9261453)
chr3 (49-170)||(6435788-6435907)
[»] chr2 (2 HSPs)
chr2 (48-170)||(45658354-45658474)
chr2 (59-170)||(14868707-14868816)
[»] chr8 (5 HSPs)
chr8 (48-170)||(15630396-15630516)
chr8 (48-170)||(15277835-15277955)
chr8 (48-170)||(15458204-15458324)
chr8 (48-170)||(43217662-43217782)
chr8 (211-251)||(33470162-33470202)
[»] chr1 (2 HSPs)
chr1 (48-170)||(16851835-16851955)
chr1 (129-170)||(8313484-8313525)
[»] chr4 (3 HSPs)
chr4 (48-170)||(24183518-24183638)
chr4 (58-170)||(28475728-28475838)
chr4 (55-158)||(35308070-35308170)
[»] chr6 (2 HSPs)
chr6 (48-170)||(34516651-34516769)
chr6 (211-248)||(27904570-27904607)
[»] chr7 (3 HSPs)
chr7 (112-170)||(38789036-38789094)
chr7 (48-101)||(6187805-6187858)
chr7 (48-101)||(6194321-6194374)
[»] scaffold0191 (1 HSPs)
scaffold0191 (112-170)||(5088-5146)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 46103322 - 46103001
Alignment:
Q  1 ggttgatgaagatttataacttcaagaagatcgaaaagaatggcctcccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||    
T  46103322 ggttgatgaagatttataacttcaagaagatcgaaaagaattgcctcccaatgcgtcgatccacattagtgttcgttcctccagaaagcccaatggtggt 46103223  T
Q  101 gtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtggatcacgaacacggagagaatgctcgccgtataaacaaatcaagttct 200  Q
      ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  46103222 --atgatactttggttcaacgttctgggggaacgggagtgttttaggtggtggatcacgaacattgagagaatgctcgccgtataaacaaatcaagttct 46103125  T
Q  201 aaatacaacctcggtccttgggtaggataccgagttttcaaaaataaataatgaaagttcgaaatacaacctgatgtaagtaaaattgtcatactattag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  46103124 aaatacaacctcggtccttgggtaggataccgagttttcaaaaataaataatgaaagttcgaaatacaacctgatgtaagtaaaaatgtcgtactattag 46103025  T
Q  301 ctatcctatagtattgagtatctg 324  Q
    ||||||||||||||||||||||||    
T  46103024 ctatcctatagtattgagtatctg 46103001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 169 - 324
Target Start/End: Complemental strand, 46118744 - 46118589
Alignment:
Q  169 agaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggtaggataccgagttttcaaaaataaataatgaaagttcgaaataca 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  46118744 agaatgctcgccgtataaacaaatcaagttctaaatacaacctcggtccttgggcaggataccgagttttcaaaaataaataatgaaagtttgaaataca 46118645  T
Q  269 acctgatgtaagtaaaattgtcatactattagctatcctatagtattgagtatctg 324  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46118644 acctgatgtaagtaaaattgtcatactattagctatcctataatattgagtatctg 46118589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 9261337 - 9261453
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||||||||||||| |   |||||||| |||||||||  |||||  |||||| |||||||||||||||||| ||||||||| |||||||||    
T  9261337 ccaatgcgtcgatccacattagtgtcctctcctccagaaagcccaacagtggt--atgatattttggttcaacgttctgggggagcgggattgttttagg 9261434  T
Q  148 tggtggatcacgaacacgg 166  Q
    |||||||||| ||||||||    
T  9261435 tggtggatcatgaacacgg 9261453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 6435788 - 6435907
Alignment:
Q  49 caatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggt 148  Q
    |||||||||||||||||||||| || ||||||||| ||||| ||| ||||||  |||||| |||||||||| ||||||  ||| || |||||||||||||    
T  6435788 caatgcgtcgatccacattagtgttcgctcctccagaaagcgcaacggtggt--atgatattttggttcaaagttctgtgggaacgagagtgttttaggt 6435885  T
Q  149 ggtggatcacgaacacggagag 170  Q
    ||||||||| ||||||||||||    
T  6435886 ggtggatcatgaacacggagag 6435907  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 45658354 - 45658474
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||| ||||||||| || ||||||||| ||||||||| ||| ||  |||||| |||||||||||||||||| |||||||||||||||||||    
T  45658354 ccaatgcgtcgattcacattagtgttcgctcctccagaaagcccaacggtagt--atgatattttggttcaacgttctgggggagcgggagtgttttagg 45658451  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  45658452 tggtggatcacgaacacggagag 45658474  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 14868707 - 14868816
Alignment:
Q  59 atccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtggatcac 158  Q
    |||||||||||| || ||||||||| ||||||||| ||||||  |||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  14868707 atccacattagttttcgctcctccagaaagcccaacggtggt--atgatattttggttcaaagttctgggggagcaggagtgttttaggtggtggatcac 14868804  T
Q  159 gaacacggagag 170  Q
    ||||||||||||    
T  14868805 gaacacggagag 14868816  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 15630396 - 15630516
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||||||||||||| || ||||||||| ||||| ||| | ||||  |||||| |||||||||| ||| ||| |||||||||||||||||||    
T  15630396 ccaatgcgtcgatccacattagtgttcgctcctccagaaagctcaacgatggt--atgatattttggttcaaagttatgggggagcgggagtgttttagg 15630493  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  15630494 tggtggatcacgaacacggagag 15630516  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 15277955 - 15277835
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||||||||||||| || ||||||| | |||||| ||  | || |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  15277955 ccaatgcgtcgatccacattagtgttcgctcctctagaaagcc-aaccgagg-gtatgatattttggttcaacgttctgggggagtgggagtgttttagg 15277858  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  15277857 tggtggatcacgaacacggagag 15277835  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 15458324 - 15458204
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||||||||||||| || ||||||| | |||||| ||  | || |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  15458324 ccaatgcgtcgatccacattagtgttcgctcctctagaaagcc-aaccgagg-gtatgatattttggttcaacgttctgggggagtgggagtgttttagg 15458227  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  15458226 tggtggatcacgaacacggagag 15458204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 43217782 - 43217662
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    ||||||||||||||||||||||| || |||| || | |||| |||| |||| |  |||||| |||||||||||||| | | |||||||||||||||||||    
T  43217782 ccaatgcgtcgatccacattagtgttcgctcatctagaaagtccaacggtgtt--atgatattttggttcaacgttttaggggagcgggagtgttttagg 43217685  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||| ||||    
T  43217684 tggtggatcacgaacacgaagag 43217662  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 33470162 - 33470202
Alignment:
Q  211 tcggtccttgggtaggataccgagttttcaaaaataaataa 251  Q
    |||||||||| || ||||| |||||||||||||||||||||    
T  33470162 tcggtccttgagtcggatatcgagttttcaaaaataaataa 33470202  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 16851835 - 16851955
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    |||||||||||||||| |||||| |  ||||||||| ||||||||| ||||||  |||||| |||||||||||||| ||| |||||||||||||||||||    
T  16851835 ccaatgcgtcgatccaaattagtgtacgctcctccagaaagcccaacggtggt--atgatattttggttcaacgttttgggggagcgggagtgttttagg 16851932  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||| ||||    
T  16851933 tggtggatcacgaacacgaagag 16851955  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 8313525 - 8313484
Alignment:
Q  129 ggagcgggagtgttttaggtggtggatcacgaacacggagag 170  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  8313525 ggagtgggagtgttctaggtggtggatcacgaacacggagag 8313484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 24183638 - 24183518
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    |||||| |||||||||||| ||| || ||||||||  ||||||||| ||||||  |||||| ||||||||||| |||||| |||| ||||||||||||||    
T  24183638 ccaatgtgtcgatccacatcagtgttcgctcctccggaaagcccaacggtggt--atgatattttggttcaacattctgggggagtgggagtgttttagg 24183541  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  24183540 tggtggatcacgaacacggagag 24183518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 28475838 - 28475728
Alignment:
Q  58 gatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtggatca 157  Q
    ||||||||||||| || ||||||||| |||| |||||  ||||  ||||||   |||||||||||| | |  ||||||||||||| ||||||||||||||    
T  28475838 gatccacattagtgttggctcctccagaaagtccaattctggt--atgatatcatggttcaacgttgtaggagagcgggagtgttctaggtggtggatca 28475741  T
Q  158 cgaacacggagag 170  Q
    |||||||||||||    
T  28475740 cgaacacggagag 28475728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 35308070 - 35308170
Alignment:
Q  55 gtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttaggtggtgga 154  Q
    |||||||||||||||| || ||||||||| |||| |||||  | ||  ||||||   |||||||||||| | | |||||||||||||| |||||||||||    
T  35308070 gtcgatccacattagtgtt-gctcctccaaaaagtccaattatagt--atgatatcctggttcaacgttgtaggggagcgggagtgttctaggtggtgga 35308166  T
Q  155 tcac 158  Q
    ||||    
T  35308167 tcac 35308170  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 34516769 - 34516651
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtgtatgatactttggttcaacgttctggaggagcgggagtgttttagg 147  Q
    |||||| |||||||||||||||| || ||||||||| |||| |||||  ||| || |||||   | |||||||||| |  ||| ||||||||||| ||||    
T  34516769 ccaatgtgtcgatccacattagtgttggctcctccagaaagtccaattctgg-gt-tgatatcctagttcaacgttgt--aggggcgggagtgttctagg 34516674  T
Q  148 tggtggatcacgaacacggagag 170  Q
    |||||||||||||||||||||||    
T  34516673 tggtggatcacgaacacggagag 34516651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 27904570 - 27904607
Alignment:
Q  211 tcggtccttgggtaggataccgagttttcaaaaataaa 248  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  27904570 tcggtccttgggttggataccgagttttaaaaaataaa 27904607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 38789094 - 38789036
Alignment:
Q  112 tggttcaacgttctggaggagcgggagtgttttaggtggtggatcacgaacacggagag 170  Q
    |||||||||||| | | |||||||||||||| ||||||||||||||| |||||||||||    
T  38789094 tggttcaacgttgtaggggagcgggagtgttctaggtggtggatcacaaacacggagag 38789036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 6187805 - 6187858
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtg 101  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| |||||||    
T  6187805 ccaatgcgtcgatccacattagtgttcgctcctccagaaagcccaacggtggtg 6187858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 6194321 - 6194374
Alignment:
Q  48 ccaatgcgtcgatccacattagtctttgctcctccataaagcccaatggtggtg 101  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| |||||||    
T  6194321 ccaatgcgtcgatccacattagtgttcgctcctccagaaagcccaacggtggtg 6194374  T

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Target: scaffold0191 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 5088 - 5146
Alignment:
Q  112 tggttcaacgttctggaggagcgggagtgttttaggtggtggatcacgaacacggagag 170  Q
    |||||||||||| |   ||||||| |||||| |||||||||| ||||||||||||||||    
T  5088 tggttcaacgttgtaagggagcggcagtgttctaggtggtgggtcacgaacacggagag 5146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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