View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14539_high_5 (Length: 326)

Name: NF14539_high_5
Description: NF14539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14539_high_5
NF14539_high_5
[»] scaffold0246 (1 HSPs)
scaffold0246 (13-326)||(10061-10377)


Alignment Details
Target: scaffold0246 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 10377 - 10061
Alignment:
Q  13 aatatctaatctaattaagaacaaatctaactacttgtatgtaaagaaaattcacaataaaatgaaagaacgaaatatcagaacgtagagaaacagacac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10377 aatatctaatctaattaagaacaaatctaactacttgtatgtaaacaaaattcacaataaaatgaaagaacgaaatatcagaacgtagagaaacaaacac 10278  T
Q  113 actatatt---gtttaccaaattcagtttagattgacctatatgaaattgactttcaacagtttttcaaaaataaaccacaatatctatgatgacattta 209  Q
    ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10277 actatattattgtttaccaaattcagtttagattgacctatatgaaattgactttcaacagtttttcaaaaatagaccacaatatctatgatgacattta 10178  T
Q  210 tttcgaactaattaaacttgtccatatataatagtagatcggattggtttggttttacagtcctactaaatatcatgatactcctccaacaacttatcac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10177 tttcgaactaattaaacttgtccatatataatagtagatcggattggtttggttttacagtcctactaaatatcatgatactcctccaacaacttatcac 10078  T
Q  310 aattccgacgagagata 326  Q
    |||||||||||||||||    
T  10077 aattccgacgagagata 10061  T

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