View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14539_low_1 (Length: 520)
Name: NF14539_low_1
Description: NF14539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14539_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 34 - 513
Target Start/End: Complemental strand, 1480684 - 1480206
Alignment:
| Q |
34 |
acatacataatcatgttattgatatgaagtattacttttgtctagtggtgattaatctcaatcaaatttttgggtgaaacttaaaacatttttgtttcaa |
133 |
Q |
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| T |
1480684 |
acatacataatcatgttattgatatgaagtattacttttgtctagtggtgattaatctcaatcaaatttttgggtgaaacttaaaacatttttgtttcaa |
1480585 |
T |
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| Q |
134 |
acataattttattctataatgcacaattaagatagttgttgtaacatgtacatgtttatttctagcattgaatcaacaagtctcgccatcggactaaata |
233 |
Q |
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| T |
1480584 |
acataattttattctataatgcacaattaagatagttgttgtaacatgtacatgtttatttctagcattgaatcaacaagtctcgccatcggactaaata |
1480485 |
T |
|
| Q |
234 |
agatatgataaaaattattgatttaattgtnnnnnnnncaaacttatgtatggtacaaaactgtttacttatgtgtcatagattaaagtgattcctatca |
333 |
Q |
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| T |
1480484 |
agatatgataaaaattattgatttaattgtaaaaaaa-caaacttatgtatggtacaaaactgtttacttatgtgtcatagattaaagtgattcctatca |
1480386 |
T |
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| Q |
334 |
ataatacgaagtacaaatactctttatattgatttctactttcattgtatttcatacataactattttacttgtgcgtcgtagaattaaaagtaatatac |
433 |
Q |
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| T |
1480385 |
ataatacgaagtccaaatactctttatattgatttctactttcattgtatttcatacataactattttacttgtgcgtcgtagaattaaaagtgatatac |
1480286 |
T |
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| Q |
434 |
ttatcaataacaaactttggtacaaagagttttgttgattttgacgaagcacaatgatattaaagtaattgaaagtatta |
513 |
Q |
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| T |
1480285 |
ttatcaataacaaactttggtacaaagagttttgttgattttgacgaagcacaatgatattaaagtaattgaaagtatta |
1480206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 1481450 - 1481289
Alignment:
| Q |
95 |
tcaaatttttgggtgaaacttaaaacatttttgtttcaaacataattttattctataatgcacaattaagatagttgttgtaacatgtacatgtttattt |
194 |
Q |
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|||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| | ||||||| | |||||||| |
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| T |
1481450 |
tcaaatttgtgggcgaaacttaaaatatttttgtttcaaacataatttt--tctataatgcacaagtgagatagttgttcttacatgtataggtttattt |
1481353 |
T |
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| Q |
195 |
ctagcattgaatcaacaagtctcgccatcggactaaataagatatgataaaaattattgattta |
258 |
Q |
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| T |
1481352 |
ctaacattgaatcaataagtcttgccatcgaattaaataagatatgataagaattattgattta |
1481289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 1481247 - 1481190
Alignment:
| Q |
349 |
aatactctttatattga-tttctactttcattgtatttcatacataactattttactt |
405 |
Q |
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|||| |||||||||||| ||||||||| ||||||| |||||||| |||||||| |||| |
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| T |
1481247 |
aatattctttatattgattttctacttccattgtacttcatacaaaactatttaactt |
1481190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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