View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14539_low_2 (Length: 304)

Name: NF14539_low_2
Description: NF14539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14539_low_2
NF14539_low_2
[»] chr3 (13 HSPs)
chr3 (1-292)||(38028837-38029128)
chr3 (1-292)||(38040152-38040443)
chr3 (1-292)||(38033850-38034142)
chr3 (1-292)||(38036864-38037156)
chr3 (1-292)||(50909737-50910029)
chr3 (8-292)||(38024946-38025229)
chr3 (21-292)||(38031398-38031668)
chr3 (1-292)||(55084563-55084855)
chr3 (95-292)||(50911940-50912137)
chr3 (121-292)||(38043798-38043972)
chr3 (156-292)||(48840782-48840917)
chr3 (121-292)||(50904863-50905037)
chr3 (207-248)||(50913480-50913521)
[»] chr8 (2 HSPs)
chr8 (1-292)||(21604825-21605119)
chr8 (21-292)||(21607367-21607637)
[»] chr4 (20 HSPs)
chr4 (131-292)||(17970204-17970368)
chr4 (202-292)||(27444865-27444955)
chr4 (189-281)||(27415590-27415679)
chr4 (204-281)||(27566033-27566110)
chr4 (207-281)||(27478965-27479039)
chr4 (207-281)||(27486025-27486099)
chr4 (207-281)||(27500420-27500494)
chr4 (207-289)||(27523477-27523559)
chr4 (204-238)||(27563471-27563505)
chr4 (204-281)||(27505784-27505861)
chr4 (204-281)||(27513858-27513935)
chr4 (207-292)||(27556450-27556535)
chr4 (200-292)||(27431219-27431311)
chr4 (205-281)||(27498397-27498473)
chr4 (207-262)||(27469444-27469499)
chr4 (207-262)||(27486967-27487022)
chr4 (189-256)||(27554275-27554342)
chr4 (207-292)||(27424585-27424670)
chr4 (207-292)||(27446131-27446216)
chr4 (204-292)||(27425793-27425881)
[»] chr2 (1 HSPs)
chr2 (131-292)||(3073474-3073638)
[»] chr5 (1 HSPs)
chr5 (202-281)||(1756839-1756918)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38029128 - 38028837
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38029128 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacacttatcttatatctga 38029029  T
Q  101 gaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattg 200  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38029028 gaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattg 38028929  T
Q  201 aatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028928 aatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 38028837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38040443 - 38040152
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||    
T  38040443 tttcaagaaactcttgtaaactataaatatagtgtcctccttcacaacaatcacaaatcactcaaacaatcaaacttatatacatttatcttacatctga 38040344  T
Q  101 gaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040343 gaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattg 38040244  T
Q  201 aatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040243 aatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 38040152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38034142 - 38033850
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||    
T  38034142 tttcaacaaactcttggaaactataaatatagggtcctccttcacaacaatcacaaatcactcaagcaatcaaacttatatacacttatcttacatctga 38034043  T
Q  101 gaaattcatcttgttcatcaaaacat-ttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtatt 199  Q
    ||||||| |||||||| |||||| |  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38034042 gaaattcgtcttgttcttcaaaaaaaattgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagtcaaacatcaaaagcatt 38033943  T
Q  200 gaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38033942 gaatgtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttca 38033850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38037156 - 38036864
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| || |||    
T  38037156 tttcaaaaaactcttggaaactataaatataatgtcctccttcacaacaatcacaaatcactcaagcaaacaaacttatatacatttatcttacatttga 38037057  T
Q  101 gaaattcatcttgttcatcaaaacatt-tgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtatt 199  Q
    |||||||||||||||| |||||| |   |||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  38037056 gaaattcatcttgttcttcaaaaaaaactgaaatgggtttccgtttacctgcagctattagacgggcttcctttagcagtagccaaacatccaaagtatt 38036957  T
Q  200 gaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| | |||||||||||||||||||||||||    
T  38036956 gaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttca 38036864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 50909737 - 50910029
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||  |||| ||||||||| ||||||    
T  50909737 tttcaagaaactcttagaaactataaatattgtgtcctcattcacaacactcacaaatcactcaagcaatcaaacttggatacttttatcttacatctga 50909836  T
Q  101 gaaattcatcttgtt-catcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtatt 199  Q
    |||||||||||| || | |||||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  50909837 gaaattcatcttatttcttcaaaacatttgaaatgggtttccgtttaccagcagctattagacgagcttcatttagcagtagccaaacatcaaaagtatt 50909936  T
Q  200 gaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||    
T  50909937 gaatgtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttca 50910029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 38025229 - 38024946
Alignment:
Q  8 aaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattc 107  Q
    ||||||||| || ||||||||||| | |||||| || ||||  |||||||||| |||||||| |||  ||  | |||||| ||||| |||||||||||||    
T  38025229 aaactcttgaaatctataaatacattatcctccatcgcaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatctgagaaattc 38025131  T
Q  108 atcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatg 204  Q
    |  || ||| |||||||||||||||||||||| |||||| ||||   |||||||||  ||||||| |  ||||||||| |||||   ||||   ||||||    
T  38025130 agttttttcttcaaaacatttgaaatgggtttccgtttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagctgtgaatg 38025034  T
Q  205 tgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    | |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  38025033 taccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttca 38024946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 38031668 - 38031398
Alignment:
Q  21 ctataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatca 120  Q
    ||||||||||| |||||| |||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || |||||||    
T  38031668 ctataaatacactgtccttcttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcatca 38031570  T
Q  121 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 217  Q
    ||||||||||||||||||| | |||| ||||   |||||||||  ||||||| |  ||||||||| |||||   ||||   ||||||| |||||||||||    
T  38031569 aaacatttgaaatgggtttccatttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagctgtgaatgtaccaaagggcta 38031473  T
Q  218 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  38031472 tcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttca 38031398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 55084563 - 55084855
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctga 100  Q
    |||||| ||||||||| |||||||||||||| ||||||| ||||||||  |||||||| ||||| |||| |||  ||  |||| ||| ||||| ||||||    
T  55084563 tttcaataaactcttgaaaactataaatacattgtcctctttcacaac-ttcacaaattactcaggcaaacaaatttagatacctttttcttaaatctga 55084661  T
Q  101 gaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--aaagtat 198  Q
     ||||||| ||||||  |||||||||||||||| ||||| |||||| |||||||||||||| || ||||||| |   ||||||||||||||  ||| | |    
T  55084662 taaattcagcttgttattcaaaacatttgaaat-ggtttccgtttacctgcagctattagaaggacttcatttacgggtagccaaacatcatcaaaatct 55084760  T
Q  199 -tgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
     ||||||||||||| || | |||||||||||| ||||||||| |||||||||| ||||| ||||| | ||| |||||||||||| | ||||||||    
T  55084761 gtgaatgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttca 55084855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 50912137 - 50911940
Alignment:
Q  95 atctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca--- 191  Q
    ||||||||||||||  || ||| |||||| ||||||||||||||| |||||| ||||    ||||||||  ||||||| |   |||||||| |||||       
T  50912137 atctgagaaattcagttttttcttcaaaatatttgaaatgggtttccgtttacctgcc---attagacgaacttcatttacaggtagccaagcatcatca 50912041  T
Q  192 aaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttc 291  Q
    |||||  ||||||||||||||||||||||||| || || ||||||||  | ||||| || ||||| ||||||| ||||||||||||||||||||||||||    
T  50912040 aaagttgtgaatgtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttc 50911941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 38043798 - 38043972
Alignment:
Q  121 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 217  Q
    |||||||| ||||||| || | |||| ||||||||||   | |||||||||| || || ||||||||||||   |||||    |||||||||||| ||||    
T  38043798 aaacatttaaaatgggcttccatttacctgcagctatagtaagggcttcatttagaagcagccaaacatcattgaaagtcacaaatgtgccaaagagcta 38043897  T
Q  218 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||| |||||||| |||||||||| ||||| ||||| | |||||||||||| ||| |||| |||||    
T  38043898 tcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttca 38043972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 48840917 - 48840782
Alignment:
Q  156 attagacgggcttcattcagcagtagccaaacatcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttg 255  Q
    |||||||||| |||||| |||||||  ||  |||||||||||    ||||||||||||| ||||||||| ||||||| |||||| | |||||||||||||    
T  48840917 attagacgggtttcatttagcagtaaacat-catcaaaagtagcagatgtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgatttg 48840819  T
Q  256 ttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    | ||||||| | |||||||||||||||| ||||||||    
T  48840818 taatccccatgccatacttgaaccaagcctcatttca 48840782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 292
Target Start/End: Complemental strand, 50905037 - 50904863
Alignment:
Q  121 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagtattga---atgtgccaaagggcta 217  Q
    |||||||| ||||||| ||  ||||| | |||||||| ||| ||||||| || || ||||||||| |||||| |  |  ||   ||||||||||||| ||    
T  50905037 aaacatttaaaatgggcttctgtttaccagcagctataagaagggcttcctttagtagtagccaagcatcaacaaaagcgacaaatgtgccaaagggata 50904938  T
Q  218 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||||||||||||||||||  |||||||||| ||||| ||||  | ||| |||||||||||| ||||||||||    
T  50904937 tcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttca 50904863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 50913480 - 50913521
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaag 248  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  50913480 ccaaaaggctatcttgcagtgtatgttggagagaaaatgaag 50913521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21605119 - 21604825
Alignment:
Q  1 tttcaaaaaactcttggaaactataaatacagtgtcctcct---tcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatc 97  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21605119 tttcaaaaaactcttggaaactataaatacagtgtcctcctccttcacaacaatcacaaatcactcaagcaatcgatcttttatacatttatcttatatc 21605020  T
Q  98 tgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagta 197  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21605019 tgagaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcattcagcagtagccaaacatcaaaagta 21604920  T
Q  198 ttgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604919 ttgaatgtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 21604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 21607637 - 21607367
Alignment:
Q  21 ctataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatca 120  Q
    ||||||||||| ||||||||||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || ||| |||    
T  21607637 ctataaatacactgtcctccttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcttca 21607539  T
Q  121 aaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggcta 217  Q
    ||||||||||||||||||| |||||| ||||   |||||||||  ||||||| |  ||||||||| |||||   |||||  ||||||| |||||||| ||    
T  21607538 aaacatttgaaatgggtttccgtttacctgc---tattagacgaacttcatttacaagtagccaagcatcatcaaaagttgtgaatgtaccaaagggata 21607442  T
Q  218 tcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||| || || |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |||||    
T  21607441 tcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttca 21607367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 292
Target Start/End: Original strand, 17970204 - 17970368
Alignment:
Q  131 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 227  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  17970204 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 17970303  T
Q  228 tacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  17970304 tacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttca 17970368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 27444955 - 27444865
Alignment:
Q  202 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||    
T  27444955 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttca 27444865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 27415590 - 27415679
Alignment:
Q  189 tcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    ||||||||  || ||||||||||||| |||||||||||||| |||||| | |||   ||||||||||| |||||||  |||||||||||||||    
T  27415590 tcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttggaaaacaa---aagcgatttgtgatccccatatcatacttgaaccaa 27415679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 27566110 - 27566033
Alignment:
Q  204 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    ||||||||||| |||||||||||||| ||||||||| ||   ||||||||||| |||||||  |||||| ||||||||    
T  27566110 gtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaa 27566033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 27479039 - 27478965
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    |||||||||||| |||||||||| ||||||||| ||  |||||| |||||| |||| |  |||||||||||||||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaa 27478965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 27486099 - 27486025
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    |||||||||||| |||||||||| ||||||||| ||  |||||| |||||| |||| |  |||||||||||||||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaa 27486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 27500494 - 27500420
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    ||||| || ||||| ||||||||||| |||||| |||||||||||||||| ||||| |  |||||||| ||||||    
T  27500494 ccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaa 27500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 27523559 - 27523477
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatt 289  Q
    |||||||||||||| ||||||||||| |||||| |||||||||| ||||| || ||    ||||| ||||||||| |||||||    
T  27523559 ccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcatt 27523477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 27563505 - 27563471
Alignment:
Q  204 gtgccaaagggctatcttgcagtgtacgttggaga 238  Q
    |||||||||||||||||||||||||||||||||||    
T  27563505 gtgccaaagggctatcttgcagtgtacgttggaga 27563471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 27505861 - 27505784
Alignment:
Q  204 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    ||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||| || ||    |||||||||||||||    
T  27505861 gtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaa 27505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 281
Target Start/End: Complemental strand, 27513935 - 27513858
Alignment:
Q  204 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    |||||||| || ||||| |||||||| || |||||| |||||||||| ||||| ||||| |  |||||||||||||||    
T  27513935 gtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaa 27513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 27556535 - 27556450
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||| |||||||| ||||| || ||||||||  |||||||||||||||| || ||||  ||||  ||||||||| ||||||||||    
T  27556535 ccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttca 27556450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 27431311 - 27431219
Alignment:
Q  200 gaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||||||| ||| ||||||| || ||||| ||  |||||||| | ||||| ||||| |  ||||||||||||||| | ||||||||    
T  27431311 gaatgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttca 27431219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 27498397 - 27498473
Alignment:
Q  205 tgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    |||||||||| ||||| ||||| || ||||||||| ||||||| || ||||| ||||| |  |||||||||||||||    
T  27498397 tgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaa 27498473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 27469444 - 27469499
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 262  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||| ||||| |||||    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccc 27469499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 27486967 - 27487022
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccc 262  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||| ||||| |||||    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccc 27487022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 27554275 - 27554342
Alignment:
Q  189 tcaaaagtattgaatgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 256  Q
    ||||||| | || ||||||||||||| || |||||||| || ||||||||| |||||||||| |||||    
T  27554275 tcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgt 27554342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 27424670 - 27424585
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||| |||||||| ||||| || |||||||| ||||||| ||| ||||| || ||    ||||||||||||||| ||||||||||    
T  27424670 ccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttca 27424585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 27446131 - 27446216
Alignment:
Q  207 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||| ||||||||||| || || ||||||||  |||||||||||||||| || || || ||||  ||||| ||| ||||||||||    
T  27446131 ccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttca 27446216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 27425793 - 27425881
Alignment:
Q  204 gtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    ||||||||||| ||||||||||| || ||||||||| ||   ||||| | ||| ||||| |  ||||||||||||||| | ||||||||    
T  27425793 gtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttca 27425881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 292
Target Start/End: Original strand, 3073474 - 3073638
Alignment:
Q  131 aatgggttttcgtttatctgcagctattagacgggcttcattcagcagtagccaaacatca---aaagtattgaatgtgccaaagggctatcttgcagtg 227  Q
    |||||| || |||||| |||||||||| ||| |||   |||| ||||| |||||||| |||   ||||||   |||||||||||||| |||||||| |||    
T  3073474 aatgggcttccgtttacctgcagctataagaagggtgacatttagcagcagccaaacgtcattgaaagtagcaaatgtgccaaagggatatcttgcggtg 3073573  T
Q  228 tacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttca 292  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  3073574 tacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttca 3073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 1756918 - 1756839
Alignment:
Q  202 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaa 281  Q
    |||| ||||||||||||||||||||| | ||||||||| ||  |||||| ||||| ||||| |  |||||||||||||||    
T  1756918 atgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaa 1756839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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