View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1453_high_1 (Length: 506)
Name: NF1453_high_1
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_high_1 |
 | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 34719795 - 34720167
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34719795 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
34719894 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34719895 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagatgtgaaatgaatcttgcacgagtatcttc |
34719994 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34719995 |
ccctctgaaactcaagaacacatcatagatcctttcctaaaataaaaaaataaagcaaattagcaaagcttgtgtactagctaaatacctggtatgctat |
34720094 |
T |
|
| Q |
301 |
taacatcaaccatctgttttgaaacttgtagttactttgatatttaatttttattcacaacctaacaaacttc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34720095 |
taacatcaaccatctgttttgaaacttgtacttactttgatatttaatttttattcacaacctaacaaacttc |
34720167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 34715032 - 34715333
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
||||||||||||| ||| ||||| | |||||||||||| |||| |||| |||| |||||||| |||| | ||||||| ||| || |||| ||||||| |
|
|
| T |
34715032 |
aactcttgcatacgccagtttgaactagcataattactatacaaaacaacaatacaaattctatactgtctaattgcttccaaaaggtagactgagatct |
34715131 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | |||||| | |||||||||| |
|
|
| T |
34715132 |
tttctcctggttgaatctcattatcgtctctaaaaacataaattccagcattttgaagagaggtatagagatgtgaagtcaatctttcgcgagtatcttt |
34715231 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||| |||||| ||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
34715232 |
ccctctgaaactcaagaacacatcatagaacctttcctgaa---gaaaaagaaagtaaattatcaaagcttgtgtagtagctaaatacctagtatgctat |
34715328 |
T |
|
| Q |
301 |
taaca |
305 |
Q |
| |
|
|||| |
|
|
| T |
34715329 |
caaca |
34715333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 34729698 - 34729938
Alignment:
| Q |
3 |
ctcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctga |
102 |
Q |
| |
|
|||| |||||||||||||||||| ||||| | |||||||| |||| ||||||||| |||||||| |||||||| |||||| ||| | ||||||||| |
|
|
| T |
34729698 |
ctctagcatacaccatcttgaatcagcatagcttctagacaaaacaacgatagaaattttagactgctcaattgcttgcaacaatgacgctgagatctga |
34729797 |
T |
|
| Q |
103 |
tcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttccc |
202 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||| |||||||||| || | || |
|
|
| T |
34729798 |
tcacctcgttgaatctcatcatcatctctaaaaacataaattccagcattttcaagagctgtatagagatgtgaaatgaattttgcacgagtgtcgttcc |
34729897 |
T |
|
| Q |
203 |
ctctgaaactcaagaacacatcatagatcctttcctaaaat |
243 |
Q |
| |
|
||| |||||||||||| ||||| || |||||| |||||||| |
|
|
| T |
34729898 |
ctcggaaactcaagaagacatcgtaaatccttccctaaaat |
34729938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 34734262 - 34734502
Alignment:
| Q |
3 |
ctcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctga |
102 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || ||| |||||| ||| || |||| |||| |
|
|
| T |
34734262 |
ctctagcatacaccatcttgaattagcatagtttctagacaaaacaatgatagaaattctagactgtcctatggcttgcaacaatgacactgagacctga |
34734361 |
T |
|
| Q |
103 |
tcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttccc |
202 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||| ||||| |||||||| ||| | |||||||| |||||||||||| ||||| |||| || || | |
|
|
| T |
34734362 |
tcacctcgttgaatctcatcatcgcctctaaaaacataaattccagcattttcaagggccgtatagagatgtgaaatgaattttgcatgagtgtcgtcgc |
34734461 |
T |
|
| Q |
203 |
ctctgaaactcaagaacacatcatagatcctttcctaaaat |
243 |
Q |
| |
|
| | |||||||||||| ||||| || |||| | |||||||| |
|
|
| T |
34734462 |
cccggaaactcaagaagacatcgtaaatccctccctaaaat |
34734502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 18925636 - 18925424
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||| |||||||| ||| ||||||| ||||||||||| ||| |
|
|
| T |
18925636 |
catacaccatcttgaattagcataattactagacaaaacaactatagaaattctacactcttcaattgctttcaaaagtgagaatgagatctgatctcct |
18925537 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
|| |||||||||| || |||| | ||||||| ||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||| |||||||| |
|
|
| T |
18925536 |
cgttgaatctcatcattgtctttgaaaacatgaataccggcattttgaagagaagtatagagatgtgaaatgaattttgcacgacaatctatccctctga |
18925437 |
T |
|
| Q |
209 |
aactcaagaacac |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18925436 |
aactcaagaacac |
18925424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 444 - 491
Target Start/End: Original strand, 34720237 - 34720284
Alignment:
| Q |
444 |
gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34720237 |
gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattt |
34720284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6833487 - 6833264
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6833487 |
aactctagcatacaccatcttgaattggcataatttgtagacaaaacaatgatagaaattctagactgcccaattgctcgcaacagtgagattgagatct |
6833388 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| |||||||| ||||||||| | ||| ||| ||| | ||||||||||||||| | |||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
6833387 |
gatctcctcgttgaatctcgttatcgtctttgaaagcatgaatcccttcattttgaagagaggaaaagagatgtgacatgaactttgcacgactatcttc |
6833288 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
6833287 |
ccctctgaaactcaagaatacatc |
6833264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6793536 - 6793310
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
6793536 |
aactctagcatacaccatcttgaattggcgtaatttgtagacaacacaacaatagaaattctagactgtccaattgctcgcaacagtgagattgagatat |
6793437 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| | ||||||| ||| | ||||||||||| |||| |||||| ||||| | || |||| ||| | ||||| |
|
|
| T |
6793436 |
gatctcctcgttgaatctcatcatcgtctttgaaaacatgaatccctgcattttgaagggaggaatagagatgtgacacaaactttgcccgattgtcttc |
6793337 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatcata |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6793336 |
ccctctgaaactcaagaacacatcata |
6793310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6592144 - 6592370
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||| |||| ||| || |||||||||| ||||||||||||||||||||| ||||| | |
|
|
| T |
6592144 |
aactctagcatacaccatcttgaattagcataatttgtagacaaaacaacgatacaagttctagactgttcaattgctcgcaacagtgagattgagatat |
6592243 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| |||||||| | ||||||||| ||||||| ||| | |||||||||||||||| |||||| ||||| ||||| |||| ||| | ||||| |
|
|
| T |
6592244 |
gatctcctcgttgaatctcgtcatcgtctctgaaaacataaatccccgcattttgaagagaggaatagagatgtgacatgaactttgcccgattgtcttc |
6592343 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatcata |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6592344 |
tcctctgaaactcaagaacacatcata |
6592370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6625775 - 6625998
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || |||| || || | |||| |||||||||| || || ||||||||||| ||||| | ||||||| |
|
|
| T |
6625775 |
aactctagcatacaccatcttgaattagcatagtttgtagataaaaccacaataaaaattctagagtgtccgattgctcgcaatagtgaaattgagatct |
6625874 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| ||||| |||| |||||| | ||||||| ||| | |||||||||||||| | |||||| ||||||||||| |||||||| | ||||| |
|
|
| T |
6625875 |
gatcgcctcgttgaatttcatcgtcgtctttgaaaacataaatcccggcattttgaagagatgaatagagatgtgaaatgaactttgcacgactgtcttc |
6625974 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6625975 |
ccctctgaaactcaagaacacatc |
6625998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 6716589 - 6716374
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||| |
|
|
| T |
6716589 |
catacaccatcttgaattagcataatttgtagacaaaacaacgatagaaattctagactgttcaattgctttccccagtgagaccgagatttgatctcct |
6716490 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
|| |||||| ||| |||||| | ||| ||| ||| | ||| | |||||||||| || ||| ||||| ||||| |||| |||| | ||||||||||||| |
|
|
| T |
6716489 |
cgttgaatcccatcgtcgtctttgaaagcataaatccctgcactgtgaagagaggaatggagatgtgatatgaaccttggacgattgtcttcccctctga |
6716390 |
T |
|
| Q |
209 |
aactcaagaacacatc |
224 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6716389 |
aactcaagaacacatc |
6716374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 6549314 - 6549524
Alignment:
| Q |
8 |
gcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacc |
107 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||| |||| ||| ||||||||||||| ||||||||||| |||||||||| || |||||||| || |
|
|
| T |
6549314 |
gcatacaccatctagaattagcataatttttagacaaaacaacgatacaaattctagactgtccaattgctcgaaacagtgagattgatatctgatctcc |
6549413 |
T |
|
| Q |
108 |
tcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctg |
207 |
Q |
| |
|
||| ||||||| ||||||| | ||||||| ||| | ||||||| |||||||| || || |||||||||||| | |||||| |||||||||||| | |
|
|
| T |
6549414 |
tcgttgaatcttgaaatcgtctttgaaaacatgaatccctgcattttcaagagaggaatgcagatgtgaaatgaatttcgcacgactatcttcccctcgg |
6549513 |
T |
|
| Q |
208 |
aaactcaagaa |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
6549514 |
aaactcaagaa |
6549524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6648240 - 6648017
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||| ||||||| | ||| || ||||||||||| || || |||||||||||||||||||| ||||| | |
|
|
| T |
6648240 |
aactctagcatacaccatctggaattagcataatttgtagacaaaataatgatggaaattctagattgtccgattgctcgcaacagtgagactgagattt |
6648141 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||||||||||| || ||| ||||| ||| || ||| | |||||||| ||||| | | ||| ||||| ||||| ||||||| | ||||| |
|
|
| T |
6648140 |
gatctcctcgctgaatctgatcatcatctctgaaagtatgaatccctgcattttgcagagatgaaaagatatgtgacatgaactttgcacggctgtcttc |
6648041 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
6648040 |
ccctctaaaactcaagaacacatc |
6648017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6770611 - 6770394
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||| || || || | |
|
|
| T |
6770611 |
aactctagcatacaccatctagaattagcataatttgtagagaaaacaactatagaaattctagactgtccaattgctcgcaacagtgcgattgatatat |
6770512 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
| || ||||| |||| ||||| ||||||||||||| || ||| | |||||||||||||| |||||| ||||||||||| | | |||| | ||| | |
|
|
| T |
6770511 |
gctctcctcgttgaagctcatcatcgtctctaaaagcaaaaatagctgaattttgaagagaggaatagagatgtgaaatgaacttcgaacgattgtctac |
6770412 |
T |
|
| Q |
201 |
ccctctgaaactcaagaa |
218 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
6770411 |
ccctctaaaactcaagaa |
6770394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6750040 - 6749817
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| | ||||||| |||| ||||||||||||||||| |||||||||| ||||| || | ||| || | |
|
|
| T |
6750040 |
aactctagcatacaccatcttgaattagcatagcttgtagacaaaacaacgatagaaattctagactgttcaattgctcggaacagcgatatcgatattt |
6749941 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| |||||||| | ||||||| || |||| ||| |||||||||||||| | || || |||||||||||| |||||||| | || || |
|
|
| T |
6749940 |
gatctcctcgttgaatctcgtcatcgtcttggaagacatgaatcgctgcattttgaagagaagaatgcagatgtgaaatgaattttgcacgactgtcgtc |
6749841 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6749840 |
tcctctgaaactcaagaacacatc |
6749817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 21227275 - 21227102
Alignment:
| Q |
51 |
aatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagca |
150 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| |||||| | ||||||||||| ||||| | ||| ||| |||||| | ||||||| ||| | |||| |
|
|
| T |
21227275 |
aatagaaattctagactgtccgattgcttgcaagagtgagcctgagatctgatctcctcgttctatcccatcgtcgtctttgaaaacataaatcccagca |
21227176 |
T |
|
| Q |
151 |
ttttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
||| ||||||||| || ||| |||||||||||| | || || | ||||||||||||||||||||||||||||| |
|
|
| T |
21227175 |
tttcgaagagaggaattgagatgtgaaatgaatttcacatgactttcttcccctctgaaactcaagaacacatc |
21227102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 6667231 - 6667102
Alignment:
| Q |
94 |
gagatctgatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgag |
193 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||| || ||| | |||||||||||||| | |||||| ||||| ||||| |||||||| |
|
|
| T |
6667231 |
gagatctgatcacctcgttgaatctcatcatcatctctgaaagtataaatacccgcattttgaagagaagaatagaggtgtgacatgaactttgcacgac |
6667132 |
T |
|
| Q |
194 |
tatcttcccctctgaaactcaagaacacat |
223 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
6667131 |
tttcttcccctctgaaactcaagaacacat |
6667102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6501269 - 6501489
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| | ||||||| |||| |||||||||||||||| |||| |||||| ||| ||||| | ||||| |
|
|
| T |
6501269 |
aactctagcatacaccatctcgaattggcataagttgtagacaaaacaacaatagaaattctagaccgcccgattgctttcaatagtgacattgagattc |
6501368 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| |||| ||||||||| | ||| ||||| ||| || ||||| |||||||||||||||||||| || ||||| ||||| ||| || | ||||| |
|
|
| T |
6501369 |
gatctcctctctgaatctcgtcatcatctctgaaagtataaattcctgcattttgaagagaggtataaagatgtgatatgaactttgtacaacaatcttt |
6501468 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacac |
221 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
6501469 |
tccgctgaaactcaagaacac |
6501489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 10034923 - 10034814
Alignment:
| Q |
8 |
gcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacc |
107 |
Q |
| |
|
||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||||||||||| ||||||||| | |||| |||||| ||||||| ||| || |
|
|
| T |
10034923 |
gcatacaccattttgaattagcaaaatttctagacaatacaacaatagaaattctagactgaccaattgcttgtaacaatgagactgagatcttatctcc |
10034824 |
T |
|
| Q |
108 |
tcgctgaatc |
117 |
Q |
| |
|
|| |||||| |
|
|
| T |
10034823 |
acgttgaatc |
10034814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 7889609 - 7889821
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||| ||||||| ||| | || |||||| |||| |||||||||| ||||||| || | ||| | | |||| ||| ||||||||||| ||| |
|
|
| T |
7889609 |
catacaccattttgaattagcaaagtttttagacagaacaacaatagaaattttagactgtccgacagcttggattagtgcgactgagatctgatctcct |
7889708 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
|| |||||| ||| ||||||| | ||||||| || | | ||||||||||||| |||| || |||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
7889709 |
cgttgaatcccatcatcgtctttgaaaacataaagcccggaattttgaagagagatatatagatgtgaaatgaattttgctcgacagtcttcccctctga |
7889808 |
T |
|
| Q |
209 |
aactcaagaacac |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7889809 |
aactcaagaacac |
7889821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6536982 - 6537208
Alignment:
| Q |
1 |
aactcttgcatacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || ||||||| |||| | | |||||||||| | |||||||||||||||||||| | ||||||| |
|
|
| T |
6536982 |
aactctagcatacaccatcttgaattagcatattttttagacaaaacaacgagggcaattctagaccgtccaattgctcgcaacagtgatattgagatct |
6537081 |
T |
|
| Q |
101 |
gatcacctcgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttc |
200 |
Q |
| |
|
|||| ||||| | ||||| | ||||||| | ||||||| ||| | |||||||||||||| || | ||||||| |||| | ||||| | || || |
|
|
| T |
6537082 |
gatctcctcgttcgatctcgtcatcgtctttgaaaacatgaatcgcggaattttgaagagaggaattcaaatgtgaaacgaatttcacacgactgtcgtc |
6537181 |
T |
|
| Q |
201 |
ccctctgaaactcaagaacacatcata |
227 |
Q |
| |
|
|||||| |||||||| ||||||||||| |
|
|
| T |
6537182 |
ccctctaaaactcaaaaacacatcata |
6537208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 6712825 - 6712613
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||| |||| ||||||||||| || || | ||||||||| |||||||||| ||||| | ||| ||| |
|
|
| T |
6712825 |
catacaccatcttgaattagcataatttatcgacaaaacaactatagaaattcttgagtgtcgaattgctcgtaacagtgagattgagatatcatctcct |
6712726 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
| |||||||| || |||| |||||| ||| | |||||||||||||| | || || ||||||| |||| |||||| | || |||||||||| |
|
|
| T |
6712725 |
tgttgaatctc---gtcacctctgaaaacagaaatccctgcattttgaagagaagaatgcagatgtgaaacgaattttgcactaccgtcgtcccctctga |
6712629 |
T |
|
| Q |
209 |
aactcaagaacacatc |
224 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6712628 |
aactcaagaacacatc |
6712613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 6812902 - 6812692
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| | || || |||| ||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||| |
|
|
| T |
6812902 |
catacaccatcttgaattagcataatttatcgataaaacaactatagaaattctagaccatccaattgctttcaacag--agattgagatatgatctcct |
6812805 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
|| ||||||||| ||| ||| ||| ||| ||| | |||||||||||||||| ||| | || ||||||||| | |||||| | || |||||||| | |
|
|
| T |
6812804 |
cgttgaatctcagcatc---tctgaaagcataaatccccgcattttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaa |
6812708 |
T |
|
| Q |
209 |
aactcaagaacacatc |
224 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
6812707 |
aactcaagatcacatc |
6812692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 10034798 - 10034728
Alignment:
| Q |
156 |
aagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcat |
226 |
Q |
| |
|
|||||||| |||||| |||||||||||| | || ||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
10034798 |
aagagaggaatagagatgtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcat |
10034728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 4332567 - 4332495
Alignment:
| Q |
152 |
tttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc |
224 |
Q |
| |
|
|||||||||| ||| |||| |||||| ||||| ||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
4332567 |
tttgaagagatgtagagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatc |
4332495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 2087 - 2188
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||| |
|
|
| T |
2087 |
catacaccatcttgaattagcataatttgtagacaaaacaacgatagaaattctagactgttcaattgctttccccagtgagaccgagatttgatctcct |
2186 |
T |
|
| Q |
109 |
cg |
110 |
Q |
| |
|
|| |
|
|
| T |
2187 |
cg |
2188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 5092881 - 5092784
Alignment:
| Q |
130 |
ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcata |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||| || | |||||| |||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
5092881 |
ctaaaaacattaattccagcattttgaagtgaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcata |
5092784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 5149863 - 5149959
Alignment:
| Q |
130 |
ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcat |
226 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| | |||||| |||||| ||||| ||| || |||||||||||||| ||||| |||||||| |||| |
|
|
| T |
5149863 |
ctaaaaactttaattccagcattttgaagagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacacttcat |
5149959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 5444065 - 5443943
Alignment:
| Q |
112 |
tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac |
211 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||| ||| |||||||||| | ||| || |||||| |||| ||||||||||||| |||||| |||| |
|
|
| T |
5444065 |
tgaagctcattatcgtctataaaaaccttaattccagccttttgaagagcagcatacagatgtgaagtgaaggaagcacgagtatctttccctctaaaac |
5443966 |
T |
|
| Q |
212 |
tcaagaacacatcatagatcctt |
234 |
Q |
| |
|
| |||||||| |||| ||||||| |
|
|
| T |
5443965 |
ttaagaacacgtcatggatcctt |
5443943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 5422126 - 5422042
Alignment:
| Q |
150 |
attttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt |
234 |
Q |
| |
|
|||||||||||| | |||||| |||||| ||||| |||||||||||| || ||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
5422126 |
attttgaagagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatggatcctt |
5422042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 5264391 - 5264505
Alignment:
| Q |
112 |
tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac |
211 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||||||||||| | ||| || ||||||| ||| | ||||||||| || || ||||||| |
|
|
| T |
5264391 |
tgaagctcattatcgtctctaaaaactttaattccagcattttgaagagctgcatatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaac |
5264490 |
T |
|
| Q |
212 |
tcaagaacacatcat |
226 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
5264491 |
ttaagaacacgtcat |
5264505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 5429542 - 5429438
Alignment:
| Q |
130 |
ctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcataga |
229 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| | |||||| |||||| |||| | | ||||||||||| ||||| ||||| | |||||| |||| || |
|
|
| T |
5429542 |
ctaaaaacagtaattccagcattttgaagagaagcatagagatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcatgga |
5429443 |
T |
|
| Q |
230 |
tcctt |
234 |
Q |
| |
|
||||| |
|
|
| T |
5429442 |
tcctt |
5429438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 5107934 - 5108045
Alignment:
| Q |
123 |
atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca |
222 |
Q |
| |
|
||||||||||||||| || |||| ||| || |||||||| | |||||| |||||| |||| ||||||||||||| ||||||||||| | |||||| |
|
|
| T |
5107934 |
atcgtctctaaaaacgttgattccagcgttctgaagagaagcatagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacg |
5108033 |
T |
|
| Q |
223 |
tcatagatcctt |
234 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
5108034 |
tcatggatcctt |
5108045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 5185076 - 5185121
Alignment:
| Q |
189 |
acgagtatcttcccctctgaaactcaagaacacatcatagatcctt |
234 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
5185076 |
acgagtatcttcccctctaaaacttaagaacacatcatggatcctt |
5185121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 5394305 - 5394196
Alignment:
| Q |
112 |
tgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaac |
211 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||| | ||||| ||||| | |||||| |||||| ||||| | |||||| || ||||||||||||| |
|
|
| T |
5394305 |
tgaagctcattatcatctctaaaaaccttaattccaaaatttttaagagccgcatagagatgtgaagtgaatgaagaacgagtgtcctcccctctgaaac |
5394206 |
T |
|
| Q |
212 |
tcaagaacac |
221 |
Q |
| |
|
| |||||||| |
|
|
| T |
5394205 |
ttaagaacac |
5394196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 5160652 - 5160756
Alignment:
| Q |
123 |
atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca |
222 |
Q |
| |
|
|||||| |||||||| |||| || ||| |||||||| | | |||||| |||||| ||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
5160652 |
atcgtccctaaaaacgttaagtccagcgttttgaagtgcagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacact |
5160751 |
T |
|
| Q |
223 |
tcata |
227 |
Q |
| |
|
||||| |
|
|
| T |
5160752 |
tcata |
5160756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 5358315 - 5358399
Alignment:
| Q |
150 |
attttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt |
234 |
Q |
| |
|
||||||||| || | |||||| |||||| |||| | ||| |||| || || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
5358315 |
attttgaagggaagcatagagatgtgaagtgaagcaagcatgagtgtcctctcctctgaaactcaagaacacatcatggatcctt |
5358399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 5340504 - 5340401
Alignment:
| Q |
123 |
atcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacaca |
222 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| | | |||||| |||||| |||| | ||||||| || | |||||| |||||||| ||||| |
|
|
| T |
5340504 |
atcgtctctaaaaacagtaattccagcattttgaagtgcagcatagagatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacact |
5340405 |
T |
|
| Q |
223 |
tcat |
226 |
Q |
| |
|
|||| |
|
|
| T |
5340404 |
tcat |
5340401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 12773 - 12860
Alignment:
| Q |
52 |
atagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacctcgctgaatctcattatcgtctctaaaaacat |
139 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||||| ||||| ||||| ||||| |||||||||| ||||||| | ||||||| |
|
|
| T |
12773 |
atagaaattctagactggccaattggtcggcacagtgagattgagatatgatctcctcggtgaatctcatcatcgtctttgaaaacat |
12860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 374 - 164
Alignment:
| Q |
9 |
catacaccatcttgaatttgcataattactagacaatacaataatagaaattctagactgcccaattgctcgcaacagtgagaccgagatctgatcacct |
108 |
Q |
| |
|
|||||||||||||||||| |||||||| | || || |||| ||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||| |
|
|
| T |
374 |
catacaccatcttgaattagcataatttatcgataaaacaactatagaaattctagaccatccaattgctttcaacag--agattgagatatgatctcct |
277 |
T |
|
| Q |
109 |
cgctgaatctcattatcgtctctaaaaacattaattctagcattttgaagagaggtatagagttgtgaaatgaatcttgcacgagtatcttcccctctga |
208 |
Q |
| |
|
|| ||||||||| ||| ||| ||| ||| ||| | |||||||||||||||| ||| | || ||||||||| | |||||| | || |||||||| | |
|
|
| T |
276 |
cgttgaatctcagcatc---tctgaaagcataaatccccgcattttgaagagaggaatacaaatgggaaatgaatttcgcacgactgtcatcccctctaa |
180 |
T |
|
| Q |
209 |
aactcaagaacacatc |
224 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
179 |
aactcaagatcacatc |
164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University