View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_high_24 (Length: 249)

Name: NF1453_high_24
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_high_24
NF1453_high_24
[»] chr7 (2 HSPs)
chr7 (1-247)||(34719453-34719696)
chr7 (56-86)||(18925795-18925825)
[»] chr4 (5 HSPs)
chr4 (198-236)||(28485794-28485832)
chr4 (198-231)||(23149866-23149899)
chr4 (91-131)||(6549081-6549121)
chr4 (91-131)||(6591918-6591958)
chr4 (198-242)||(56446885-56446929)
[»] chr1 (3 HSPs)
chr1 (198-230)||(27446681-27446713)
chr1 (198-231)||(9922208-9922241)
chr1 (198-231)||(40905825-40905858)
[»] chr5 (1 HSPs)
chr5 (198-236)||(32997444-32997482)
[»] chr8 (1 HSPs)
chr8 (198-231)||(26413398-26413431)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 34719696 - 34719453
Alignment:
Q  1 tcggagatggctttgaaaaactcgtctcaggaatctcagtggatgaagaagatgagaagatgaattggaaaacagcgctccttgaaatcagtggcatagc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34719696 tcggagatggttttgaaaaactcgtctcaggaatctcagtggatgaaga---tgagaagatgaattggaaaacagcgctccttgaaatcagtggcatagc 34719600  T
Q  101 agggtttgtcctcataaattccaggtgatttttatttatttatttgttatactttagtaatgtcagatcatgatctttggcttcctgaccnnnnnnnaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||    
T  34719599 agggtttgtcctcataaattccaggtgatttttatttatttatttgttatacattagtaatgtcagatcatgatctttggcttcctgacctttttttaat 34719500  T
Q  201 gacaaatgttagtatgttatttgttatgttaatattcttttcactcg 247  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||    
T  34719499 gataaatgttagtatgttatttgttatgttaatattcttttctctcg 34719453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 18925795 - 18925825
Alignment:
Q  56 gaagatgaattggaaaacagcgctccttgaa 86  Q
    |||||||||||||||||||||||||||||||    
T  18925795 gaagatgaattggaaaacagcgctccttgaa 18925825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 28485832 - 28485794
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgttaatatt 236  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgttaatatt 28485794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgtta 231  Q
    |||||||||||||||||||||| |||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 6549121 - 6549081
Alignment:
Q  91 gtggcatagcagggtttgtcctcataaattccaggtgattt 131  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  6549121 gtggcatatcagggtttgtcctcataaattcaaggttattt 6549081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 6591958 - 6591918
Alignment:
Q  91 gtggcatagcagggtttgtcctcataaattccaggtgattt 131  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  6591958 gtggaatagcagggtttgtcctcatagattccaggttattt 6591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 56446885 - 56446929
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgttaatattcttttc 242  Q
    |||||||||||||||||||||| ||| ||||||| |||| |||||    
T  56446885 aatgacaaatgttagtatgttaattgatatgttagtatttttttc 56446929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 27446713 - 27446681
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgtt 230  Q
    |||||||||||||||||||||||||||||||||    
T  27446713 aatgacaaatgttagtatgttatttgttatgtt 27446681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 9922241 - 9922208
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgtta 231  Q
    |||||||||||||||||||||| |||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgtta 9922208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 40905858 - 40905825
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgtta 231  Q
    |||||||||||||||||||||| |||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgtta 40905825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 32997444 - 32997482
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgttaatatt 236  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  32997444 aatgacaaatgttagtatgttagttgttacgttaatatt 32997482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 26413398 - 26413431
Alignment:
Q  198 aatgacaaatgttagtatgttatttgttatgtta 231  Q
    |||||||||||||||||||||| |||||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgtta 26413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University