View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_high_31 (Length: 232)
Name: NF1453_high_31
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 54793922 - 54793705
Alignment:
| Q |
1 |
cccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793922 |
cccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
54793823 |
T |
|
| Q |
101 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793822 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctga |
54793723 |
T |
|
| Q |
201 |
atttttcacattctcctg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
54793722 |
atttttcacattctcctg |
54793705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54775717 - 54775932
Alignment:
| Q |
1 |
cccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
100 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775717 |
cccattcctgcttgagctttttcaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
54775816 |
T |
|
| Q |
101 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775817 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctga |
54775916 |
T |
|
| Q |
201 |
atttttcacattctcc |
216 |
Q |
| |
|
||||||||||| |||| |
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| T |
54775917 |
atttttcacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52286603 - 52286386
Alignment:
| Q |
1 |
cccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
52286603 |
cccattcctgcttgagcttttttaacttctcatcttcctcattcatgactgactgtgtcaatataatagtattaccgtgttaattattatactatttcta |
52286504 |
T |
|
| Q |
101 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctga |
200 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
52286503 |
cattgaggcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctga |
52286404 |
T |
|
| Q |
201 |
atttttcacattctcctg |
218 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
52286403 |
attcttcacattctcctg |
52286386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 801766 - 801549
Alignment:
| Q |
1 |
cccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttcta |
100 |
Q |
| |
|
||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| |
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|
| T |
801766 |
cccattccttcttcagcttttgtagtttctcatcttcctcatctataactgactgtgtcaatacaacaatattaccgtgttaattattacactatttctc |
801667 |
T |
|
| Q |
101 |
cattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctga |
200 |
Q |
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|
||||| || |||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
801666 |
tattgaggcttagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctga |
801567 |
T |
|
| Q |
201 |
atttttcacattctcctg |
218 |
Q |
| |
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|| |||||||| ||||| |
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|
| T |
801566 |
gttcttcacattttcctg |
801549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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