View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_high_9 (Length: 347)
Name: NF1453_high_9
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 4246985 - 4246698
Alignment:
| Q |
18 |
caaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactattttgtaaaaaattactctggtttcgttatttcacttagacatgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4246985 |
caaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactatcttgtaaaaaattactctggtttcattatttcacttagacatgtg |
4246886 |
T |
|
| Q |
118 |
accagactttaatagacattacctatcctttttaatacatatctttcaaattgattttatcatttgcttagctagtgtgggtgnnnnnnntaatcataaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
4246885 |
accagactttaatagacattacctatcctttttaatacatatctttcaaattgatcttatcatttgcttagctagtgtgggtgaaaaaaataatcataaa |
4246786 |
T |
|
| Q |
218 |
tacattcgatgagtcttaccaaaccaagtgaacagaaattacatgctatttaattttatccatattaacataaaatatttatatgatcaccaatttgatg |
317 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4246785 |
tacattcgataagtcttaccaaaccaag----------------------taattttatccatattaacat-aaatatttatatgatcaccaatttgatg |
4246709 |
T |
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