View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_low_10 (Length: 327)

Name: NF1453_low_10
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_low_10
NF1453_low_10
[»] chr7 (14 HSPs)
chr7 (1-202)||(35742992-35743193)
chr7 (203-241)||(725667-725705)
chr7 (203-241)||(5374617-5374655)
chr7 (203-241)||(44459437-44459475)
chr7 (14-63)||(35749376-35749425)
chr7 (202-241)||(4859570-4859609)
chr7 (205-241)||(20119874-20119910)
chr7 (202-241)||(9663732-9663771)
chr7 (203-241)||(16277707-16277745)
chr7 (203-241)||(46555625-46555663)
chr7 (204-241)||(41858687-41858724)
chr7 (203-236)||(48607762-48607795)
chr7 (212-241)||(48683073-48683102)
chr7 (205-241)||(17968441-17968477)
[»] chr6 (10 HSPs)
chr6 (254-327)||(8445370-8445443)
chr6 (254-327)||(8454174-8454247)
chr6 (202-241)||(11837821-11837860)
chr6 (203-241)||(14103784-14103822)
chr6 (200-241)||(24082988-24083029)
chr6 (203-241)||(23580078-23580116)
chr6 (202-241)||(17551051-17551090)
chr6 (203-233)||(12142888-12142918)
chr6 (203-241)||(27438205-27438243)
chr6 (201-241)||(24178617-24178657)
[»] chr5 (11 HSPs)
chr5 (202-241)||(42612426-42612465)
chr5 (203-241)||(37270239-37270277)
chr5 (202-241)||(39588252-39588291)
chr5 (203-241)||(745771-745809)
chr5 (203-241)||(27020251-27020289)
chr5 (203-241)||(34401510-34401548)
chr5 (201-241)||(12499211-12499251)
chr5 (203-241)||(9591605-9591643)
chr5 (14-44)||(16865281-16865311)
chr5 (203-241)||(31552324-31552362)
chr5 (203-241)||(37940159-37940197)
[»] chr1 (9 HSPs)
chr1 (194-241)||(33704394-33704441)
chr1 (203-240)||(21096641-21096678)
chr1 (201-241)||(30838882-30838922)
chr1 (202-241)||(51086565-51086604)
chr1 (204-241)||(35954226-35954263)
chr1 (202-241)||(25655664-25655703)
chr1 (203-241)||(10772541-10772579)
chr1 (203-241)||(29522088-29522126)
chr1 (203-241)||(36307652-36307690)
[»] chr4 (15 HSPs)
chr4 (203-241)||(20354267-20354305)
chr4 (203-241)||(23419499-23419537)
chr4 (201-241)||(41041635-41041675)
chr4 (202-241)||(16664481-16664520)
chr4 (202-241)||(17360960-17360999)
chr4 (203-241)||(4652786-4652824)
chr4 (203-241)||(7487061-7487099)
chr4 (203-241)||(17520122-17520160)
chr4 (203-241)||(31292793-31292831)
chr4 (203-241)||(50496322-50496360)
chr4 (203-241)||(54919226-54919264)
chr4 (204-241)||(34072854-34072891)
chr4 (202-241)||(13534756-13534795)
chr4 (203-241)||(35824323-35824361)
chr4 (203-236)||(20787238-20787271)
[»] chr3 (18 HSPs)
chr3 (203-241)||(37220281-37220319)
chr3 (205-241)||(44843373-44843409)
chr3 (202-241)||(4233223-4233262)
chr3 (202-241)||(50548669-50548708)
chr3 (198-241)||(51722997-51723040)
chr3 (203-241)||(6177386-6177424)
chr3 (203-241)||(13213286-13213324)
chr3 (203-241)||(22604711-22604749)
chr3 (203-241)||(30043666-30043704)
chr3 (203-241)||(37785253-37785291)
chr3 (205-241)||(45169817-45169853)
chr3 (201-241)||(53845124-53845164)
chr3 (207-241)||(3892858-3892892)
chr3 (203-241)||(8852325-8852363)
chr3 (203-241)||(15084746-15084784)
chr3 (203-241)||(23019678-23019716)
chr3 (207-241)||(40905999-40906033)
chr3 (204-241)||(40423500-40423537)
[»] chr8 (12 HSPs)
chr8 (202-241)||(27911880-27911919)
chr8 (202-241)||(27958299-27958338)
chr8 (203-241)||(3846499-3846537)
chr8 (203-241)||(6093182-6093220)
chr8 (203-241)||(15883598-15883636)
chr8 (203-241)||(25583787-25583825)
chr8 (205-241)||(17853457-17853493)
chr8 (194-225)||(3705296-3705327)
chr8 (207-241)||(4622925-4622959)
chr8 (195-241)||(18955085-18955131)
chr8 (203-241)||(38577226-38577264)
chr8 (201-241)||(2082455-2082495)
[»] chr2 (11 HSPs)
chr2 (202-241)||(77774-77813)
chr2 (203-241)||(2292517-2292555)
chr2 (203-241)||(15152371-15152409)
chr2 (203-236)||(37726098-37726131)
chr2 (205-241)||(28391977-28392013)
chr2 (202-241)||(38282438-38282477)
chr2 (203-241)||(3907080-3907118)
chr2 (203-241)||(4738438-4738476)
chr2 (203-241)||(14006225-14006263)
chr2 (199-241)||(15398804-15398846)
chr2 (203-241)||(27551772-27551810)
[»] scaffold0115 (1 HSPs)
scaffold0115 (205-241)||(20718-20754)
[»] scaffold0003 (1 HSPs)
scaffold0003 (203-241)||(49119-49157)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35742992 - 35743193
Alignment:
Q  1 ctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgcaacacaagaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  35742992 ctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgcaacacaagaaata 35743091  T
Q  101 tcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttgatgccctaataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743092 tcagaagagtcaatgcaaaatctaactttgaatgccctaataataacaaatcatagtgatcaatcatgaatacaaaatctaactttgatgccctaataaa 35743191  T
Q  201 at 202  Q
    ||    
T  35743192 at 35743193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 725705 - 725667
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  725705 ggtgaggcctacgttaccctctcttgtttagagggtaat 725667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 5374655 - 5374617
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5374655 ggtgaggcctacgttaccctctcttgtttagagggtaat 5374617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 44459475 - 44459437
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44459475 ggtgaggcctacgttaccctctcttgtttagagggtaat 44459437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 35749376 - 35749425
Alignment:
Q  14 agagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac 63  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  35749376 agagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac 35749425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 4859570 - 4859609
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4859570 tggtgaggcctatgttaccctctcttgtttagagggtaat 4859609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 20119874 - 20119910
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20119874 tgaggtctacgttaccctctcttgtttagagggtaat 20119910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 9663771 - 9663732
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  9663771 tggtgaggcctatattaccctctcttgtttagagggtaat 9663732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 16277745 - 16277707
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  16277745 ggtgaagcctacgttactctctcttgtttagagggtaat 16277707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 46555663 - 46555625
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  46555663 ggtgaagcttacgttaccctctcttgtttagagggtaat 46555625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 41858724 - 41858687
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  41858724 gtgagacctatgttaccctctcttgtttagagggtaat 41858687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 48607795 - 48607762
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagg 236  Q
    |||||||||||||||||||||| |||||||||||    
T  48607795 ggtgaggcctacgttaccctcttttgtttagagg 48607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 48683073 - 48683102
Alignment:
Q  212 tacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||    
T  48683073 tacgttaccctctcttgtttagagggtaat 48683102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 17968477 - 17968441
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||| |||||||| |||||||||||||    
T  17968477 tgaggcctacgttatcctctcttatttagagggtaat 17968441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 8445370 - 8445443
Alignment:
Q  254 ctgtaaacgaggttaaaatgattcacttttctattggaattctaatgacttcctagaatcactgatatacaatg 327  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8445370 ctgtaaacgaggttaagatgattcacttttctgttggaattctaatgacttcctagaatcactgacatacaatg 8445443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 8454174 - 8454247
Alignment:
Q  254 ctgtaaacgaggttaaaatgattcacttttctattggaattctaatgacttcctagaatcactgatatacaatg 327  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8454174 ctgtaaacgaggttaagatgattcacttttctgttggaattctaatgacttcctagaatcactgacatacaatg 8454247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 11837860 - 11837821
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11837860 tggtgaggcctacgttaccctctcttgtttagagggtaat 11837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 14103784 - 14103822
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14103784 ggtgaggcctacgttaccctctcttgtttagagggtaat 14103822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 24082988 - 24083029
Alignment:
Q  200 aatggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  24082988 aatggtgaggcctacgttaccctctcttatttagagggtaat 24083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 23580078 - 23580116
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  23580078 ggtgaggcctaccttaccctctcttgtttagagggtaat 23580116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 17551090 - 17551051
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  17551090 tggtgaagcctacgttaccctctcttgtttaaagggtaat 17551051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 233
Target Start/End: Complemental strand, 12142918 - 12142888
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttag 233  Q
    |||||||||||||||||||||||||||||||    
T  12142918 ggtgaggcctacgttaccctctcttgtttag 12142888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 27438205 - 27438243
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  27438205 ggtgaggtctatgttaccctctcttgtttagagggtaat 27438243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 24178657 - 24178617
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||  ||||||||||||| ||||||||||||||||    
T  24178657 atggtgaggtgtacgttaccctcttttgtttagagggtaat 24178617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 42612465 - 42612426
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42612465 tggtgaggcctacgttaccctctcttgtttagagggtaat 42612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 37270239 - 37270277
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37270239 ggtgaggcctacgttaccctctcttgtttagagggtaat 37270277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 39588252 - 39588291
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39588252 tggtgaggcttacgttaccctctcttgtttagagggtaat 39588291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 745809 - 745771
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  745809 ggtgaagcctacgttaccctctcttgtttagagggtaat 745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 27020289 - 27020251
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  27020289 ggtgaggcctacattaccctctcttgtttagagggtaat 27020251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 34401510 - 34401548
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34401510 ggtgaggtctacgttaccctctcttgtttagagggtaat 34401548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 12499211 - 12499251
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  12499211 atggtgaggcctatgttaccctcttttgtttagagggtaat 12499251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 9591605 - 9591643
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  9591605 ggtgaggtctacattaccctctcttgtttagagggtaat 9591643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
Q  14 agagtcataagtgaactacaaattcaagcaa 44  Q
    |||||||||||||||||||||||||||||||    
T  16865311 agagtcataagtgaactacaaattcaagcaa 16865281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 31552362 - 31552324
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  31552362 ggtgaggcctacgttaccctctcctgtttagagagtaat 31552324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 37940197 - 37940159
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  37940197 ggtgaggtctacgttactctctcttgtttagagggtaat 37940159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 33704394 - 33704441
Alignment:
Q  194 taataaaatggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  33704394 taataatatggtgaagcctacgttaccctctcttgtttagagggtaat 33704441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 21096641 - 21096678
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaa 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21096641 ggtgaggcctacgttaccctctcttgtttagagggtaa 21096678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 30838922 - 30838882
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  30838922 atggtgaggcctacgttaccctctcttatttagagggtaat 30838882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 51086565 - 51086604
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  51086565 tggtgaggcctacgttaccctctcttatttagagggtaat 51086604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 35954226 - 35954263
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||| |||||||||||||||||||||||||||    
T  35954226 gtgaggcctatgttaccctctcttgtttagagggtaat 35954263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 25655664 - 25655703
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  25655664 tggtgaggtctacgttaccctttcttgtttagagggtaat 25655703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 10772541 - 10772579
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  10772541 ggtgaagcctacgttatcctctcttgtttagagggtaat 10772579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 29522126 - 29522088
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  29522126 ggtgaggtctaggttaccctctcttgtttagagggtaat 29522088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 36307652 - 36307690
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  36307652 ggtgaggtctatgttaccctctcttgtttagagggtaat 36307690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 20354305 - 20354267
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20354305 ggtgaggcctacgttaccctctcttgtttagagggtaat 20354267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 23419537 - 23419499
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23419537 ggtgaggcctacgttaccctctcttgtttagagggtaat 23419499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 41041675 - 41041635
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  41041675 atggtgaggcctacattaccctctcttgtttagagggtaat 41041635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 16664481 - 16664520
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16664481 tggtgaggcctacgttaccctctcttgtttagaggataat 16664520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 17360960 - 17360999
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  17360960 tggtgaggtctacgttaccctctcttgtttagagggtaat 17360999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 4652786 - 4652824
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4652786 ggtgaggcctacattaccctctcttgtttagagggtaat 4652824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 7487061 - 7487099
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7487061 ggtgaggcctatgttaccctctcttgtttagagggtaat 7487099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 17520160 - 17520122
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  17520160 ggtgaggtctacgttaccctctcttgtttagagggtaat 17520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 31292831 - 31292793
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  31292831 ggtgagacctacgttaccctctcttgtttagagggtaat 31292793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 50496360 - 50496322
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  50496360 ggtgaggcctacgttaccctctcttgtttagggggtaat 50496322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 54919226 - 54919264
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  54919226 ggtgaagcctacgttaccctctcttgtttagagggtaat 54919264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 34072854 - 34072891
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34072854 gtgaggtctacgttaccctctcttgtttagagggtaat 34072891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 13534795 - 13534756
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  13534795 tggtgaggcctatattaccctctcttgtttagagggtaat 13534756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 35824323 - 35824361
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  35824323 ggtgaggcatacgttaccctctcttgtttagagagtaat 35824361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 20787271 - 20787238
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagg 236  Q
    ||||||| ||||||||||||||||||||||||||    
T  20787271 ggtgaggactacgttaccctctcttgtttagagg 20787238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 37220319 - 37220281
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37220319 ggtgaggcctacgttaccctctcttgtttagagggtaat 37220281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 44843409 - 44843373
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  44843409 tgaggcctacgttaccctctcttgtttagagggtaat 44843373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 4233262 - 4233223
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4233262 tggtgaggcctaagttaccctctcttgtttagagggtaat 4233223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 50548708 - 50548669
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  50548708 tggtgaggcctacgttaccctctcttgtttagatggtaat 50548669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 51723040 - 51722997
Alignment:
Q  198 aaaatggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  51723040 aaaatggtgaggcctacgttaccctttcttgtttagagagtaat 51722997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 6177424 - 6177386
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6177424 ggtgaggcctacgttacgctctcttgtttagagggtaat 6177386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 13213286 - 13213324
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  13213286 ggtgaggcctatgttaccctctcttgtttagagggtaat 13213324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 22604711 - 22604749
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22604711 ggtgaagcctacgttaccctctcttgtttagagggtaat 22604749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 30043704 - 30043666
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  30043704 ggtgaggcctacattaccctctcttgtttagagggtaat 30043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 37785253 - 37785291
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  37785253 ggtgaggactacgttaccctctcttgtttagagggtaat 37785291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 45169817 - 45169853
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||| |||||||||||||    
T  45169817 tgaggcctacgttaccctctcttttttagagggtaat 45169853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 53845124 - 53845164
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  53845124 atggtgaggcttacgttaccctctcttatttagagggtaat 53845164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 3892892 - 3892858
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||| ||||||||||||||||||||||||||||||    
T  3892892 aggcttacgttaccctctcttgtttagagggtaat 3892858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 8852363 - 8852325
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  8852363 ggtgaggactacgttaccctctcttgtttagaggataat 8852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 15084784 - 15084746
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  15084784 ggtgaggactacgttatcctctcttgtttagagggtaat 15084746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 23019678 - 23019716
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  23019678 ggtgaggcctacgttacactctcttatttagagggtaat 23019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 40905999 - 40906033
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  40905999 aggcctacattaccctctcttgtttagagggtaat 40906033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 40423500 - 40423537
Alignment:
Q  204 gtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  40423500 gtgagacctacgttaccctctcttgtttagaaggtaat 40423537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 27911880 - 27911919
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  27911880 tggtgaggactacgttaccctctcttgtttagagggtaat 27911919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 27958299 - 27958338
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  27958299 tggtgaggactacgttaccctctcttgtttagagggtaat 27958338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 3846499 - 3846537
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  3846499 ggtgaggcctacgttacactctcttgtttagagggtaat 3846537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 6093182 - 6093220
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  6093182 ggtgagacctacgttaccctctcttgtttagagggtaat 6093220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 15883636 - 15883598
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15883636 ggtgaggcctacgttactctctcttgtttagagggtaat 15883598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 25583825 - 25583787
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  25583825 ggtgaggcctatgttaccctctcttgtttagagggtaat 25583787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 17853493 - 17853457
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17853493 tgaggtctacgttaccctctcttgtttagagggtaat 17853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 225
Target Start/End: Complemental strand, 3705327 - 3705296
Alignment:
Q  194 taataaaatggtgaggcctacgttaccctctc 225  Q
    ||||||||||||||||||||||||||||||||    
T  3705327 taataaaatggtgaggcctacgttaccctctc 3705296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 4622959 - 4622925
Alignment:
Q  207 aggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  4622959 aggcctacattaccctctcttgtttagagggtaat 4622925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 18955085 - 18955131
Alignment:
Q  195 aataaaatggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||||||||||| ||||| |||||||| ||||||||||||    
T  18955085 aataaaacggtgaggcctaagttacactctcttgcttagagggtaat 18955131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 38577264 - 38577226
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||| || |||||||||||||    
T  38577264 ggtgaggcctacgttaccctcttttatttagagggtaat 38577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 2082495 - 2082455
Alignment:
Q  201 atggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  2082495 atggtgaggcctacgttacgctctcttgtatagagagtaat 2082455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 77813 - 77774
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  77813 tggtgaggcctacgttaccctctcttgtttagaaggtaat 77774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 2292555 - 2292517
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  2292555 ggtgaggcctacgttatcctctcttgtttagagggtaat 2292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 15152371 - 15152409
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  15152371 ggtgaggcttacgttaccctctcttgtttagagggtaat 15152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 37726131 - 37726098
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagg 236  Q
    ||||||||||||||||||||||||||||||||||    
T  37726131 ggtgaggcctacgttaccctctcttgtttagagg 37726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 28392013 - 28391977
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||||||||||||||| ||||    
T  28392013 tgaggcctacgttaccctctcttgtttagaggataat 28391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 38282477 - 38282438
Alignment:
Q  202 tggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  38282477 tggtgagacttacgttaccctctcttgtttagagggtaat 38282438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 3907118 - 3907080
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  3907118 ggtgaggcctacattacactctcttgtttagagggtaat 3907080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 4738476 - 4738438
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  4738476 ggtgaagcctacgttaccctatcttgtttagagggtaat 4738438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 14006263 - 14006225
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  14006263 ggtgaggcctacattaccctctcttgttaagagggtaat 14006225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 15398804 - 15398846
Alignment:
Q  199 aaatggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||||| ||| | ||||||||||||||||    
T  15398804 aaatggtgaggcctacgttatcctttattgtttagagggtaat 15398846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 27551810 - 27551772
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  27551810 ggtgaggtctatgttaccctctcttgtttagagggtaat 27551772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 20718 - 20754
Alignment:
Q  205 tgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    |||||||||||||||||| ||||||||||||||||||    
T  20718 tgaggcctacgttaccctatcttgtttagagggtaat 20754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 49157 - 49119
Alignment:
Q  203 ggtgaggcctacgttaccctctcttgtttagagggtaat 241  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  49157 ggtgaggtctatgttaccctctcttgtttagagggtaat 49119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University