View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1453_low_14 (Length: 311)
Name: NF1453_low_14
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 42313964 - 42313680
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagctt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313964 |
acatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagctt |
42313865 |
T |
|
| Q |
110 |
ttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313864 |
ttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
42313765 |
T |
|
| Q |
210 |
tattgtgtcacgtgcagtgtaaaatgatgcatcaagtttgcctacatatgcctcataacctttgtagaaagctcttgctccaatt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313764 |
tattgtgtcacgtgcagtgtaaaatgatgcatcaagtttgcctacatatgcctcataacctttgtagaaagctcttgctccaatt |
42313680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 23040745 - 23040693
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||| || | ||||||||| |
|
|
| T |
23040745 |
acatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatc |
23040693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42734781 - 42734729
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42734781 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42734729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 42717111 - 42717156
Alignment:
| Q |
17 |
caccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42717111 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42717156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 42762713 - 42762750
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagc |
47 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
42762713 |
acatcaacaccatcacttatggcagcttcaaaaccagc |
42762750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 31108828 - 31108871
Alignment:
| Q |
166 |
acgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31108828 |
acgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 24266846 - 24266787
Alignment:
| Q |
78 |
ccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
137 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| || |||||||| ||||| ||||| |
|
|
| T |
24266846 |
ccaacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University