View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_17 (Length: 288)
Name: NF1453_low_17
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 30414350 - 30414596
Alignment:
| Q |
23 |
tgatttgttgtccatgaagttttaaacatttccaaggaccaatgcacaatgaaccaactatcaatgtcgtgcgatgtacaccttgctttagtacaaagct |
122 |
Q |
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| T |
30414350 |
tgatttgttgtcgatgaagttttaaacatttccaaggaccaatgcacaatgaaccaactatcaatgtcgtgcgatgtacaccttgctttagtacaaagct |
30414449 |
T |
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| Q |
123 |
actagaccaaatataatttaaccaaggtcacgagtatttgatgtgaaaatccttggtgattgttattattcctcttgcgatttggcgccatgtgttacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414450 |
actagaccaaatataatttaaccaaggtcacgagtatttgatgtgaaaatccttggtgattgttattattcctcttgcgatttggcgccatgtgttacaa |
30414549 |
T |
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| Q |
223 |
gggcgctatagttgtttgagtaaccatgtccaatataggcaggaatg |
269 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30414550 |
ggatgctatagttgtttgagtaaccatgtccaatataggctggaatg |
30414596 |
T |
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