View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1453_low_19 (Length: 278)
Name: NF1453_low_19
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 43425568 - 43425818
Alignment:
| Q |
24 |
atttctttgatcttctctttattttcaggttaggaaggagaagttaggtgacagaattactgcccttcatcagctcgtttccccatttggaaaggtaaat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43425568 |
atttctttgatcttctctttattttcaggttaggaaggagaagttaggtgacagaattactgcccttcatcagctcgtttccccatttggaaaggtaaat |
43425667 |
T |
|
| Q |
124 |
atatgcaagcctaatttattaaattcatattagaacaaaacttaggttcaccaatacattcttctccatcc------aataataactttgaaaaaacaaa |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43425668 |
atatacaagcctaatttattaaattcatattagaacaaaacttaggttcaccaatacattcttctccatccaataataataataactttgaaaaaacaaa |
43425767 |
T |
|
| Q |
218 |
ataaagtatgtcactttagttttcaatgtaattttaattattttttatttc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43425768 |
ataaagtatgtcactttagttttcaatgtaattttaattattttttatttc |
43425818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 33179073 - 33178998
Alignment:
| Q |
46 |
tttcaggttaggaaggagaagttaggtgacagaattactgcccttcatcagctcgtttccccatttggaaaggtaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
33179073 |
tttcaggttaggaaggagaagttaggtgacagaattactgcacttcatcagattgtttccccatttggaaaggtaa |
33178998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 43663533 - 43663606
Alignment:
| Q |
48 |
tcaggttaggaaggagaagttaggtgacagaattactgcccttcatcagctcgtttccccatttggaaaggtaa |
121 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| || || ||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
43663533 |
tcaggtgaggaaggagaagctaggtgatagaataacagcacttcaccagctagtttctccatttggaaaggtaa |
43663606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 21778213 - 21778244
Alignment:
| Q |
232 |
tttagttttcaatgtaattttaattatttttt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21778213 |
tttagttttcaatgtaattttaattatttttt |
21778244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University