View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1453_low_20 (Length: 276)
Name: NF1453_low_20
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 3279494 - 3279246
Alignment:
| Q |
11 |
agaatatcaacggttagaaactcttatcatatcaaatcataagtttgtttaaaaaacaacccttcattttctaactttacacttttaaaggatcataaat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3279494 |
agaataccaacggttagaaactcttatcatatcaaatcataagtttgtttaaaaaacaacccttcattttctcactttacacttt-aaaggatcataaat |
3279396 |
T |
|
| Q |
111 |
taaattaaatatatttttcatcaccaattgtaatgttaaaatgcaggctttacagttcgataaatgtgacggacttcaaataaatggactcacccatatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3279395 |
taaattaaatatatttttcatcaccaattgtaatgttaaaatgcaggctttacagttcgataaatgtgacggacttcaaataaatggactcacccatatc |
3279296 |
T |
|
| Q |
211 |
aatggtccaggagcacatatcgcggtgaccgatagtcaagatgtaactat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3279295 |
aatggtccaggagcacatatcgcggtgatcgatagtcaagatataactat |
3279246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 3274137 - 3274030
Alignment:
| Q |
153 |
gcaggctttacagttcgataaatgtgacggacttcaaataaatggactcacccatatcaatggtccaggagcacatatcgcggtgaccgatagtcaagat |
252 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
3274137 |
gcaggctttgcagtttgataaatgtgacgggcttcaaataactggactcactcatatcaatggaccaggaccacatattgcggtgacggatagccaagac |
3274038 |
T |
|
| Q |
253 |
gtaactat |
260 |
Q |
| |
|
||||||| |
|
|
| T |
3274037 |
ataactat |
3274030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 23499435 - 23499493
Alignment:
| Q |
36 |
atcatatcaaatcataagtttgtttaaaaaacaacccttcattttctaactttacactt |
94 |
Q |
| |
|
|||||| |||||||| |||||||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
23499435 |
atcataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacactt |
23499493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 31389176 - 31389124
Alignment:
| Q |
43 |
caaatcataagtttgtttaaaaaacaacccttcattttctaactttacacttt |
95 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| |||| || |||||||||||| |
|
|
| T |
31389176 |
caaatcatgagtttatttaaataacaacccttgatttgctcactttacacttt |
31389124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 30969822 - 30969762
Alignment:
| Q |
35 |
tatcatatcaaatcataagtttgtttaaaaaacaacccttcattttctaactttacacttt |
95 |
Q |
| |
|
||||||| |||||||| |||||||| || |||||||||| ||||||| |||||||||||| |
|
|
| T |
30969822 |
tatcataacaaatcatgagtttgttacaataacaacccttgattttctcactttacacttt |
30969762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 39421580 - 39421524
Alignment:
| Q |
38 |
catatcaaatcataagtttgtttaaaaaacaacccttcattttctaactttacactt |
94 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||||||| || ||||||| ||||||||||| |
|
|
| T |
39421580 |
cataacaaatcatgagtttgttaaaataacaacctttgattttctcactttacactt |
39421524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 41417215 - 41417155
Alignment:
| Q |
36 |
atcatatcaaatcataagtttgtttaaaaaacaacccttcattttctaactttacactttt |
96 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
41417215 |
atcatagcaaatcacgagtttgttacaataacaacccttgattttcttactttacactttt |
41417155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University