View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_low_24 (Length: 261)

Name: NF1453_low_24
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_low_24
NF1453_low_24
[»] chr1 (3 HSPs)
chr1 (18-242)||(12609782-12610008)
chr1 (18-242)||(12636878-12637104)
chr1 (18-239)||(15885859-15886082)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-242)||(62030-62254)
[»] chr3 (14 HSPs)
chr3 (21-215)||(23145824-23146020)
chr3 (21-215)||(23036074-23036270)
chr3 (21-215)||(23148662-23148858)
chr3 (21-215)||(23024176-23024372)
chr3 (21-215)||(23139950-23140146)
chr3 (21-207)||(23016974-23017162)
chr3 (21-215)||(23038945-23039141)
chr3 (48-215)||(23032618-23032787)
chr3 (85-211)||(22941540-22941666)
chr3 (76-219)||(22916831-22916974)
chr3 (85-211)||(22831743-22831869)
chr3 (76-207)||(22932125-22932256)
chr3 (88-219)||(22971851-22971982)
chr3 (78-215)||(22986181-22986318)
[»] chr6 (1 HSPs)
chr6 (21-206)||(21779726-21779913)
[»] scaffold0554 (1 HSPs)
scaffold0554 (23-206)||(6656-6841)
[»] chr8 (2 HSPs)
chr8 (85-211)||(5594196-5594322)
chr8 (181-219)||(23610117-23610155)
[»] chr5 (4 HSPs)
chr5 (78-134)||(7154492-7154548)
chr5 (184-218)||(41317195-41317229)
chr5 (184-217)||(41329236-41329269)
chr5 (184-218)||(41287361-41287395)
[»] chr2 (1 HSPs)
chr2 (76-145)||(2433639-2433708)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 12610008 - 12609782
Alignment:
Q  18 aagtactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctg 115  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12610008 aagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaataattttgagtacattccctttggtgctg 12609909  T
Q  116 gaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12609908 gaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 12609809  T
Q  216 gaaaggcgaggacttaaacatgactga 242  Q
    |||||| ||||||||| ||||||||||    
T  12609808 gaaaggtgaggacttagacatgactga 12609782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 12637104 - 12636878
Alignment:
Q  18 aagtactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctg 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||| |||||||| |    
T  12637104 aagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcag 12637005  T
Q  116 gaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  12637004 gaagaagaatatgcccaggcatcacatttggtttgataaatgttgagttggcacttgcattgttgttatatcactttgattggaggcttcccaatggaat 12636905  T
Q  216 gaaaggcgaggacttaaacatgactga 242  Q
    |||||| ||||| ||  ||||||||||    
T  12636904 gaaaggtgaggatttggacatgactga 12636878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 15885859 - 15886082
Alignment:
Q  18 aagtactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctg 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||| |||||| |||    
T  15885859 aagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctg 15885958  T
Q  116 gaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    ||||||||||||| || || |  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||     
T  15885959 gaagaagaatatgcccgggcataacatttggtttggtaaatgttgagttggcacttgcattgttgttgtatcactttgattggaggcttcccgatggaac 15886058  T
Q  216 gaaaggcgaggacttaaacatgac 239  Q
    |||||| ||||||||| |||||||    
T  15886059 gaaaggtgaggacttagacatgac 15886082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 62254 - 62030
Alignment:
Q  20 gtactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctgga 117  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||  |||||| ||||||||||| ||||||||||| ||||||||||||    
T  62254 gtactggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaataatttcgagtacattccttttggtgctgga 62155  T
Q  118 agaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaatga 217  Q
    | ||||||||| ||||| || | |||||||||||| | | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  62154 aaaagaatatgcccaggcagtaaatttggtttgatgagtcttgagctggcacttgcaatgttgttgtatcactttgattggaagcttcccaatggaatga 62055  T
Q  218 aaggcgaggacttaaacatgactga 242  Q
    || | || |||||  ||||||||||    
T  62054 aatgtgaagacttggacatgactga 62030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23146020 - 23145824
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||  ||||  ||| ||||||| ||| |||||||||||||| |||||||||||||    
T  23146020 tactggactgaaccagagaggttttatccagagagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaa 23145921  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||||||||| |||||||||||||||| |||| ||||| |||  |||||| || | |||||||| ||||| ||||||||||| | ||||||    
T  23145920 gaagaatatgtccagggagcacatttggtttgacaaatattgagctggtccttgcaatgttattgtatcattttgactggaagcttcctagtggaat 23145824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23036270 - 23036074
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    |||||||||||||||||||| |||||||| |||||||||||||  ||| |||||  ||||||||||| ||| |||||||||||||| |||||||| ||||    
T  23036270 tactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagtaactttgagtacattccttttggtgccggaa 23036171  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||  |||| |||||  || |||||||||| ||||| ||||||||||| | ||||||    
T  23036170 gaagaatatgcccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttccaagtggaat 23036074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23148858 - 23148662
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||  ||||  ||| ||||||| ||| || ||||||||||| |||||||| ||||    
T  23148858 tactggactgaaccagagaggttttatccagagagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaa 23148759  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||| ||||| |||| ||||||||||| |||| ||||| |||| || ||| || |||||||||| ||||| ||||||||||||| ||||||    
T  23148758 gaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgttgttgtatcattttgactggaagcttcccagtggaat 23148662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23024372 - 23024176
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||   ||||  ||| ||||||| ||| |||||||| ||||| |||||||| |||     
T  23024372 tactggaccgaaccagagaggttttatccagagagattcatcgatagtgatattgactataaagggagtaactttgagtatattccttttggtgcgggac 23024273  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||||||||| |||| ||||||||||  || ||||||| | || ||||||  | ||||||| || ||||||||||||||||| ||||||||    
T  23024272 gaagaatatgtccagggagcatatttggtttgcgaagtgttgagctagcccttgcaaagttgttgtaccattttgattggaagcttcctaatggaat 23024176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23140146 - 23139950
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    |||||||||||||||||||  |||||||||||||||||||| || | | |||||  ||| ||||||| | |||||||||||||||| |||||||| |||     
T  23140146 tactggactgaaccagagaaattttatccagagagattcatgggaaacactattgactataaagggagtgattttgagtacattccttttggtgcgggac 23140047  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||| ||||| |||| ||||||||||| ||||||||||||| | ||||||    |||||| | | ||||||||||||||||| | ||||||    
T  23140046 gaagaatatgcccaggaagcatatttggtttgagaaatgttgagttgacccttgcaacattgttgttttattttgattggaagcttccgagtggaat 23139950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 23017162 - 23016974
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||| |  | |  ||||  ||| ||||||| ||| || || |||||||| ||||||| |||||    
T  23017162 tactggactgaaccagagaagttttatccagagagattcattgacaacggtattgactataaagggagtaacttcgaatacattccttttggtggtggaa 23017063  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttccc 207  Q
    |||||||||| || || || ||||| ||||||| ||||||||||||||| |||||  || |||||||||| ||||| ||||||||||||    
T  23017062 gaagaatatgccctgggagtacattcggtttgagaaatgttgagttggcccttgcgatgttgttgtatcattttgactggaagcttccc 23016974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 23039141 - 23038945
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    ||||||||||| || ||||| |||||||||||||||||| | |  ||| | |||  ||| ||||| | ||||| |||||||||||| |||||||| ||||    
T  23039141 tactggactgagccggagagattttatccagagagattccttgacagcgccattgactataaaggaagtaattatgagtacattccttttggtgccggaa 23039042  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||||||| ||||| |||||||||||||||| || | ||||| |||| |||||| || |||||||||| ||||| ||||||||||| | ||||||    
T  23039041 gaagaatatgcccagggagcacatttggtttgagaagtattgagctggcccttgcaatgttgttgtatcattttgactggaagcttccaagtggaat 23038945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 23032787 - 23032618
Alignment:
Q  48 ccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttg 145  Q
    ||||||||||||||||  ||| |||||  ||| ||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  23032787 ccagagagattcatcgacagcgctattgactataaaggaagtaattttgagtacattccctttggtgccggaagaagaatatgcccagggagtacatttg 23032688  T
Q  146 gtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaat 215  Q
    |||||| |||| ||||| |||| || ||  || |||||||||| ||||| |||| ||||||  |||||||    
T  23032687 gtttgagaaatattgagctggccctcgcgatgttgttgtatcattttgactggacgcttcctgatggaat 23032618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 22941540 - 22941666
Alignment:
Q  85 aataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgt 184  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||| ||    |||||||||||| | ||||||||||   ||||||||||| || |||    
T  22941540 aataattttgagttcattccatttggtgctggaagaagaatgtgtccgggagtaacatttggtttggtcaatgttgagtacccacttgcattgttgatgt 22941639  T
Q  185 atcactttgattggaagcttcccaatg 211  Q
    |||||||||||||||| ||||||||||    
T  22941640 atcactttgattggaaacttcccaatg 22941666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 22916831 - 22916974
Alignment:
Q  76 tacaaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcat 175  Q
    |||||||| ||||||||||||| |||||| |||||   ||| |||||||| ||||||||   ||||||||| ||| | ||| |||||||  |||||||||    
T  22916831 tacaaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtccaggggtcacatttggattggtcaatattgagttttcacttgcat 22916930  T
Q  176 tgatgttgtatcactttgattggaagcttcccaatggaatgaaa 219  Q
    || || ||||||||||||||||||| |||||||||| |||||||    
T  22916931 tgttgatgtatcactttgattggaaacttcccaatgcaatgaaa 22916974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 22831869 - 22831743
Alignment:
Q  85 aataattttgagtacattccctttggtgctggaagaagaatatgtccaggtag-cacatttggtttgataaatgttgagttggcacttgcattgatgttg 183  Q
    ||||||||||||| |||||| ||||||||||| |||||||| | ||| || || ||||||||||||| | ||||||||||   ||||||||||| || ||    
T  22831869 aataattttgagttcattccttttggtgctggtagaagaatgtttcc-ggcagtcacatttggtttggtcaatgttgagtacccacttgcattgttgatg 22831771  T
Q  184 tatcactttgattggaagcttcccaatg 211  Q
    ||||||||||||||||| |||| |||||    
T  22831770 tatcactttgattggaaacttctcaatg 22831743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 22932256 - 22932125
Alignment:
Q  76 tacaaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcat 175  Q
    |||||||| ||||||||||||| |||||| |||||   ||| |||||||| ||||||||    |||||||| ||| | | |||||||||  |||||||||    
T  22932256 tacaaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtccaggggttacatttggattggtcagtgttgagttttcacttgcat 22932157  T
Q  176 tgatgttgtatcactttgattggaagcttccc 207  Q
    || || |||| |||||||||||||| ||||||    
T  22932156 tgttgatgtaccactttgattggaaacttccc 22932125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 22971982 - 22971851
Alignment:
Q  88 aattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatc 187  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| |  |  | |||| ||  |||||||||  || ||||||| ||  | |||| ||    
T  22971982 aattttgagtacattccatttggtgctggaagaagaatttgtccaggcattaactatggtatggcaaatgttgaactgacacttgctttcttattgtctc 22971883  T
Q  188 actttgattggaagcttcccaatggaatgaaa 219  Q
    |||||||||||||||||||   ||||||||||    
T  22971882 actttgattggaagcttcctggtggaatgaaa 22971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 22986318 - 22986181
Alignment:
Q  78 caaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattg 177  Q
    |||||| | |||||||||||||||||| |||||||||||||| ||||| ||||| || |  |  | |||| ||  ||||||||||   |  |||||| |     
T  22986318 caaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcctggcatgaattatggtatggcaaatgttgagcaagtccttgcactc 22986219  T
Q  178 atgttgtatcactttgattggaagcttcccaatggaat 215  Q
    || |||||||| ||||||||||| ||||||||||||||    
T  22986218 atattgtatcattttgattggaaacttcccaatggaat 22986181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 21779913 - 21779726
Alignment:
Q  21 tactggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||  ||  ||||||| |||||||||||||||||| |||||||| ||||    
T  21779913 tactggactgaaccagagatgttttatccagagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattccatttggtgccggaa 21779814  T
Q  119 gaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcc 206  Q
    |||||||||| ||||| |||||||||||||||| |||| |||||  | | |||||  || |||||||||| ||||| |||||||||||    
T  21779813 gaagaatatgcccagggagcacatttggtttgagaaatattgagacgacccttgcgatgttgttgtatcattttgactggaagcttcc 21779726  T

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Target: scaffold0554 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 6656 - 6841
Alignment:
Q  23 ctggactgaaccagagaggttttatccagagagattcatcggtagctctatt--ctacaaagggaataattttgagtacattccctttggtgctggaaga 120  Q
    ||||||||||||||||||||||||||||||||||||||  |  ||| |||||  ||| ||||||  |||||||||||||||||| |||||||||||||||    
T  6656 ctggactgaaccagagaggttttatccagagagattcactgacagcactattgactataaagggggtaattttgagtacattccttttggtgctggaaga 6755  T
Q  121 agaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcc 206  Q
    ||||| || ||||| || | ||||||||||| |||||||||| |||| |||||  || |||||||||| ||||| |||||||||||    
T  6756 agaatttgcccaggaagtatatttggtttgagaaatgttgagctggcgcttgcgatgttgttgtatcattttgactggaagcttcc 6841  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 5594196 - 5594322
Alignment:
Q  85 aataattttgagtacattccctttggtgctggaagaagaatatgtccaggtag-cacatttggtttgataaatgttgagttggcacttgcattgatgttg 183  Q
    ||||||||||||| |||||| ||||||||||| |||||||| | ||| || || ||||||||||||| | ||||||||||   ||||||||||| || ||    
T  5594196 aataattttgagttcattccttttggtgctggtagaagaatgtttcc-ggcagtcacatttggtttggtcaatgttgagtacccacttgcattgttgatg 5594294  T
Q  184 tatcactttgattggaagcttcccaatg 211  Q
    ||||||||||||||||| |||| |||||    
T  5594295 tatcactttgattggaaacttctcaatg 5594322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 23610155 - 23610117
Alignment:
Q  181 ttgtatcactttgattggaagcttcccaatggaatgaaa 219  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  23610155 ttgtatcattttgattggaaacttcccaatggaatgaaa 23610117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 7154492 - 7154548
Alignment:
Q  78 caaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccagg 134  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  7154492 caaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccagg 7154548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 41317195 - 41317229
Alignment:
Q  184 tatcactttgattggaagcttcccaatggaatgaa 218  Q
    |||||||||||||||||||||||||||||||||||    
T  41317195 tatcactttgattggaagcttcccaatggaatgaa 41317229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 41329236 - 41329269
Alignment:
Q  184 tatcactttgattggaagcttcccaatggaatga 217  Q
    ||||||||||||||||||||||||||||||||||    
T  41329236 tatcactttgattggaagcttcccaatggaatga 41329269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 41287361 - 41287395
Alignment:
Q  184 tatcactttgattggaagcttcccaatggaatgaa 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  41287361 tatcactttgattggaagcttctcaatggaatgaa 41287395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 2433639 - 2433708
Alignment:
Q  76 tacaaagggaataattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttg 145  Q
    |||||||||  ||||||||||||||| || |||||||| ||||| |||||||||||||| | ||||||||    
T  2433639 tacaaagggtctaattttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 2433708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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