View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_low_25 (Length: 251)

Name: NF1453_low_25
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_low_25
NF1453_low_25
[»] chr1 (3 HSPs)
chr1 (1-249)||(12609987-12610233)
chr1 (1-251)||(15885634-15885882)
chr1 (17-251)||(12637081-12637310)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-251)||(62233-62481)
[»] chr3 (14 HSPs)
chr3 (1-250)||(23039122-23039369)
chr3 (1-250)||(23032780-23033027)
chr3 (1-251)||(23146000-23146248)
chr3 (1-251)||(23148838-23149086)
chr3 (1-251)||(23024352-23024600)
chr3 (106-247)||(22972035-22972174)
chr3 (1-250)||(23036251-23036498)
chr3 (1-249)||(23140128-23140374)
chr3 (82-229)||(22941327-22941472)
chr3 (40-249)||(23017144-23017351)
chr3 (122-229)||(22831937-22832042)
chr3 (115-247)||(22946488-22946618)
chr3 (70-229)||(22916612-22916769)
chr3 (70-229)||(22932318-22932475)
[»] chr6 (1 HSPs)
chr6 (1-249)||(21779895-21780141)
[»] scaffold0554 (1 HSPs)
scaffold0554 (62-251)||(6487-6674)
[»] chr8 (1 HSPs)
chr8 (122-229)||(5594023-5594128)
[»] chr5 (2 HSPs)
chr5 (192-244)||(41465802-41465854)
chr5 (198-232)||(41305309-41305343)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 12610233 - 12609987
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12610233 caagatgaggtaagagatatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 12610134  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||  ||||||||||||||||||||||||||||    
T  12610133 ggttacatcctccaggtcctcttttacttccaagagaatgtggacaagcatgtgagattgatggg--tatcgtataccaatcaaaagcaaggtgatagtc 12610036  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagaga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12610035 aatgcatgggcgattggaagagatccaaagtactggactgaaccagaga 12609987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 15885634 - 15885882
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||||||| ||||||||||| |||||||  ||||||| |||||  || || | ||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  15885634 caagatgaagtaagagaaatgttcaacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaa 15885733  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||   ||| ||||||||| |||||||||||||||||||    
T  15885734 ggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatgg--ttatcatataccaaccaaaagcaaggtgatagtc 15885831  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15885832 aatgcatgggcgattggaagagatccaaagtattggactgaaccagagagg 15885882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 12637310 - 12637081
Alignment:
Q  17 aaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacaccctccagg 116  Q
    |||||||||||| |||||||| |||||  ||||| | |||||||||||||   ||||| |||| ||| |||||||||||  |||||||||||||||||      
T  12637310 aaatattcaacaagaaaggaactgttggtgaaaactatataaatgaactcgaatatttgaagttagtagtgaaagagactctaaggttacaccctccaac 12637211  T
Q  117 tcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattg 216  Q
    |||||||||||||   |||||||||||||||||| |||| ||||| ||||||   ||||||||  |||||| ||||||||||| ||||||||| | ||||    
T  12637210 tcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatc--atataccagccaaaagtaaggtgatagtaaatgcatggacaattg 12637116  T
Q  217 gaagagatccaaagtactggactgaaccagagagg 251  Q
    | |||||||||||||||||||||||||||||||||    
T  12637115 gtagagatccaaagtactggactgaaccagagagg 12637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 62481 - 62233
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||||||| || |||||||||| ||||||||| |||  | |||| |||| ||||||  |||||||||  ||  | |||||| |||||||||||||| | |    
T  62481 caagatgaagtgagagaaatatacaacatgaagggagcttttgatgaaagttgtatgcatgaactcaaatacgtgaagtcaattgtgaaagagaccctga 62382  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    |||||||||| |||||| ||||||||||||||||||||||| || ||||| ||||||||||||||  ||| |||||||||| ||||  ||| |||||||     
T  62381 ggttacaccccccaggtgctcttttacttccaagagaatgtagagaagcatgtgagattgatggg--tatcatataccaatgaaaacaaagctgatagtt 62284  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    ||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  62283 aatgcatgggcaatcggaagagatccaaggtactggacggaaccagagagg 62233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 23039369 - 23039122
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    ||||||||||| |||||  | ||||| ||||||||||  ||||| |||||||| || |||||||||| |||||| ||||||||||| ||||| ||| | |    
T  23039369 caagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccctga 23039270  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    ||||||||||||||   |||||||| || |||||||||||| | ||| || |||||||  ||||   ||| | ||||| || || || ||||||||||||    
T  23039269 ggttacaccctccaacacctcttttgctgccaagagaatgtcgtcaaacatgtgagataaatgg--ttatcacatacctattaagagtaaggtgatagtc 23039172  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagag 250  Q
    ||||| ||||| |||| |||||||||||| ||||||||||| || |||||    
T  23039171 aatgcttgggcaattgcaagagatccaaattactggactgagccggagag 23039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 23033027 - 23032780
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||| |||||| |||||  | ||||| ||||||||||| ||||| |||||||  ||    || |||| |||||| || ||||| || ||||| ||| | |    
T  23033027 caagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattacatccccgatctcaattatttgaaatcagtcgtcaaagaaaccctta 23032928  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    |||| |||||| |||  |||||||| || ||||||||||| || |||||| |||||||  |||| |||   | |||||||| ||||| ||||||||||||    
T  23032927 ggttccaccctacagtacctcttttgctaccaagagaatgcggtcaagcatgtgagataaatggttatc--acataccaattaaaagtaaggtgatagtc 23032830  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagag 250  Q
    ||||| ||||| |||| |||||||||||| ||||||||||||||||||||    
T  23032829 aatgcttgggcaattgcaagagatccaaactactggactgaaccagagag 23032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 23146248 - 23146000
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    ||||||||||| |||||  | ||||| ||||||||||  ||||| |||||||| || |||||||||| |||||| || | |||||| ||||| |||||||    
T  23146248 caagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaa 23146149  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    || ||||||||||||  ||||||||  | || ||||||||| | |||| | |||| ||  ||||   ||| | ||||| || || |  |||||| |||||    
T  23146148 ggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagaatgtgatataaatgg--ttatcacataccgattaagactaaggtgttagtc 23146051  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    ||||| |||||  ||| |||||||||||| |||||||||||||||||||||    
T  23146050 aatgcttgggcagttgcaagagatccaaactactggactgaaccagagagg 23146000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 23149086 - 23148838
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    ||||||||||| |||||  | ||||| ||||||||||| ||||| |||||||| || |||||||||| |||||| || | |||||| ||||| |||||||    
T  23149086 caagatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaa 23148987  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    || |||||||||| |  ||||||||  | || ||||||||| | |||||  |||| ||  ||||   ||| | || || || || |  || |||||| ||    
T  23148986 ggctacaccctccggcacctcttttgttaccgagagaatgtagtcaagcgtgtgatataaatgg--ttatcacattccgattaagactaaagtgataatc 23148889  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    ||||| ||||| |||| ||||||| |||| |||||||||||||||||||||    
T  23148888 aatgcttgggcaattgcaagagattcaaactactggactgaaccagagagg 23148838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 23024600 - 23024352
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||| ||||||  |||| || ||||| ||||||||||  |||||||| |||||||| |||||||| | |||||| || ||| |||| ||||| ||| | |    
T  23024600 caagctgaggtgcgagagattttcaatatgaaaggaagggttgaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctga 23024501  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    ||||||||||||| |  || |||||| | || ||||||||||  ||| || || |||| || || |||   | || ||||  || |  ||||||||||||    
T  23024500 ggttacaccctccggcaccacttttaataccgagagaatgtgctcaatcatgtaagatagacggttatg--acattccaactaagactaaggtgatagtc 23024403  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    ||||| ||||| |||| |||||||||||| |||||||| ||||||||||||    
T  23024402 aatgcttgggcaattgcaagagatccaaattactggaccgaaccagagagg 23024352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 22972174 - 22972035
Alignment:
Q  106 caccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgc 205  Q
    |||||||| |||||||||||| | ||||| |  |||||||||||  ||||||||||||| |||   | |||||||||||||| | ||||||| |||||||    
T  22972174 caccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatggttatc--acataccaatcaaaagtagggtgataatcaatgc 22972077  T
Q  206 atgggcgattggaagagatccaaagtactggactgaaccaga 247  Q
     ||||| |||||||| |||||||| || |||||||| |||||    
T  22972076 ttgggcaattggaagggatccaaaatattggactgatccaga 22972035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 23036498 - 23036251
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||| |||||| |||||  | ||||| ||||||||||  || ||||| |||||||| || ||||||| |||||| || ||||| || ||||| ||| | |    
T  23036498 caagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacgaactcatttatttgaaatcagtcgtcaaagaaaccctga 23036399  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    ||||||||||||||   |||||||| || |||||||| ||||  |||||| ||| |||  ||||   ||| | ||||| || || || ||||| | | |     
T  23036398 ggttacaccctccaacacctcttttgctaccaagagagtgtgttcaagcatgtgtgataaatgg--ttatcacatacctattaagagtaaggtaacaata 23036301  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagag 250  Q
    ||||| ||||| |||| |||||||||||| ||||||||||||||||||||    
T  23036300 aatgcttgggcaattgcaagagatccaaattactggactgaaccagagag 23036251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23140374 - 23140128
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    ||||||||||| |||||  | ||||| ||||||||||  ||||| |||||||| || || || |||  |||||| || ||| | || ||||| ||||| |    
T  23140374 caagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcgtcaaagaaaccttga 23140275  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    |||||||| |||| |  |||||||| || |||||||| ||||| |||||| |||||||  ||||   ||| | |||||| | || |  |||||| | |||    
T  23140274 ggttacacactccggtgcctcttttgctaccaagagagtgtggtcaagcatgtgagatacatgg--ttatcacataccatttaagactaaggtggtcgtc 23140177  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagaga 249  Q
    ||||||||||| || |  ||||||||||| |||||||||||||||||||    
T  23140176 aatgcatgggcaatcgcgagagatccaaactactggactgaaccagaga 23140128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 22941327 - 22941472
Alignment:
Q  82 gttgtgaaagagaccttaaggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaat 181  Q
    |||||||||||||| || || || |||||||| | | |  |||| |||||||||||||||||||||||| |||| ||  ||||||||   |||||||  |    
T  22941327 gttgtgaaagagacattgagattgcaccctcctgctgcatttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatg--atataccttt 22941424  T
Q  182 caaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaa 229  Q
     |||||||| |||||||| ||||| ||||| |||||||||||||||||    
T  22941425 taaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaa 22941472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 23017351 - 23017144
Alignment:
Q  40 gttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacaccctccaggtcctcttttacttccaagagaat 139  Q
    ||||| ||||| || ||||||||||||| |||| | || |||||||| ||||| ||| | || ||||| ||| |||  |||||||| || ||||||||||    
T  23017351 gttgatgaaaaatgcataaatgaactcagttatctgaaatcagttgtcaaagaaacccttagattacatccttcagtacctcttttgctaccaagagaat 23017252  T
Q  140 gtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtactggact 239  Q
    ||||  ||||| |||||||  ||||   ||| | |||||| | || |  ||||||||| | ||||| ||||| || | |||||||||||| |||||||||    
T  23017251 gtggtaaagcatgtgagatacatgg--ttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggact 23017154  T
Q  240 gaaccagaga 249  Q
    ||||||||||    
T  23017153 gaaccagaga 23017144  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 22832042 - 22831937
Alignment:
Q  122 ttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaaga 221  Q
    |||| |||||||||||||||||| ||||| |||||||  ||||||||   |||||||  | |||||||| |||||||| ||||| ||||| |||||||||    
T  22832042 ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatg--atataccttttaaaagcaaagtgatagtgaatgcttgggctattggaaga 22831945  T
Q  222 gatccaaa 229  Q
    ||||||||    
T  22831944 gatccaaa 22831937  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 22946618 - 22946488
Alignment:
Q  115 ggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgat 214  Q
    |||||||||||| |||| || |  |||| ||||||| ||||||||||||| |||   | ||||||||||| || | ||||||| ||||||| ||||| ||    
T  22946618 ggtcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatc--acataccaatcaatagtagggtgataatcaatgcttgggcaat 22946521  T
Q  215 tggaagagatccaaagtactggactgaaccaga 247  Q
    |||||| |||||||| || |||||||| |||||    
T  22946520 tggaagggatccaaaatattggactgatccaga 22946488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 22916612 - 22916769
Alignment:
Q  70 tatttaaagtcagttgtgaaagagaccttaaggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtata 169  Q
    ||||||||||  |||||||||||||| || || ||||| ||||| ||  |  ||||| | ||||| || |||||||||||| |||| ||  ||||||||     
T  22916612 tatttaaagtgtgttgtgaaagagacattgagattacatcctcctggagcatttttattgccaagggagtgtggacaagcatgtgaaataaatgggtatg 22916711  T
Q  170 ttatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaa 229  Q
     ||||  ||| | |||||||| |||||||| ||||| ||||| |||||||||||||||||    
T  22916712 gtata--ccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaa 22916769  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 22932475 - 22932318
Alignment:
Q  70 tatttaaagtcagttgtgaaagagaccttaaggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtata 169  Q
    ||||||||||  |||||||||||||| || || ||||||||||| ||| |  ||||| | ||||| || |||||||||||| |||| ||  |||||  ||    
T  22932475 tatttaaagtgtgttgtgaaagagacattgagattacaccctcctggtgcatttttattgccaagggagtgtggacaagcatgtgaaataaatggg--ta 22932378  T
Q  170 ttatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaa 229  Q
    |  ||| ||| | |||||||| || ||||| ||||  ||||| |||||||||||||||||    
T  22932377 tggtatcccatttaaaagcaaagtaatagtgaatgtttgggccattggaagagatccaaa 22932318  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 21780141 - 21779895
Alignment:
Q  1 caagatgaggtaagagaaatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaa 100  Q
    |||||||| || |||||| | ||||| ||||||||||  ||||| |||||||| || |||||||||| |||||| || |||||||| ||||| |||||||    
T  21780141 caagatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaaccttaa 21780042  T
Q  101 ggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtc 200  Q
    || ||||||||||||  ||||||||  | || ||||||||| | |||||| |||| ||  ||||   ||  | || || || || |  ||||||||| ||    
T  21780041 ggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagcatgtgatataaatgg--ttaccacattccgattaagactaaggtgataatc 21779944  T
Q  201 aatgcatgggcgattggaagagatccaaagtactggactgaaccagaga 249  Q
    ||||| ||||| |||| |||||||||||| |||||||||||||||||||    
T  21779943 aatgcttgggcaattgcaagagatccaaactactggactgaaccagaga 21779895  T

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Target: scaffold0554 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 6487 - 6674
Alignment:
Q  62 aactcacttatttaaagtcagttgtgaaagagaccttaaggttacaccctccaggtcctcttttacttccaagagaatgtggacaagcaggtgagattga 161  Q
    |||||| |||||| || ||||| || ||||| ||| | ||||||||||||||||  |||||||| || ||||||||||||||  ||||| |||||||  |    
T  6487 aactcaattatttgaaatcagtcgtcaaagaaacccttaggttacaccctccagcacctcttttgctaccaagagaatgtggtaaagcatgtgagataaa 6586  T
Q  162 tgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagagagg 251  Q
    ||| ||||  | |||||  | |  || ||||||||| ||||||| ||||| |||| |||||||||||| | |||||||||||||||||||    
T  6587 tggttata--acataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagagg 6674  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 5594023 - 5594128
Alignment:
Q  122 ttttacttccaagagaatgtggacaagcaggtgagattgatgggtatattatataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaaga 221  Q
    |||| |||||||||||||||||| ||||| |||||||  ||||||||   |||||||  | |||||||| |||||||| ||||| ||||| |||||||||    
T  5594023 ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatg--atataccttttaaaagcaaagtgatagtgaatgcttgggctattggaaga 5594120  T
Q  222 gatccaaa 229  Q
    ||||||||    
T  5594121 gatccaaa 5594128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 41465802 - 41465854
Alignment:
Q  192 gtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaacc 244  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  41465802 gtgatagtaaatgcatgggcgattggaagagatccaaagtattggagtgaacc 41465854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 41305309 - 41305343
Alignment:
Q  198 gtcaatgcatgggcgattggaagagatccaaagta 232  Q
    |||||||| ||||||||||||||||||||||||||    
T  41305309 gtcaatgcttgggcgattggaagagatccaaagta 41305343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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