View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_low_26 (Length: 251)

Name: NF1453_low_26
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_low_26
NF1453_low_26
[»] chr1 (2 HSPs)
chr1 (77-244)||(10355108-10355272)
chr1 (77-133)||(31042970-31043026)
[»] chr2 (3 HSPs)
chr2 (77-133)||(25622503-25622559)
chr2 (77-132)||(29685785-29685840)
chr2 (77-109)||(39647854-39647886)
[»] chr8 (2 HSPs)
chr8 (78-132)||(37007388-37007442)
chr8 (79-132)||(39932760-39932813)
[»] chr3 (1 HSPs)
chr3 (77-133)||(29611989-29612045)
[»] chr6 (1 HSPs)
chr6 (94-131)||(9762774-9762811)
[»] chr7 (1 HSPs)
chr7 (77-132)||(44452123-44452176)
[»] chr4 (2 HSPs)
chr4 (77-133)||(37461553-37461609)
chr4 (77-133)||(52650771-52650827)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 10355108 - 10355272
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacctataaaataatatggttaatcctcgtatatgtagtttaagaga 176  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||  |||||||||||||||||    
T  10355108 taattactttatttagaatacttaaagagtgtttcgggagcattcgttaacaagacccataaa-taatatggttaattctc--atatgtagtttaagaga 10355204  T
Q  177 aaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcacttcaaagaataatc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10355205 aaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcacttcaaaaaataatc 10355272  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 31043026 - 31042970
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 133  Q
    ||||||||| |||||||||| ||||||| |||  ||||  |||||||||||||||||    
T  31043026 taattacttaatttagaatgcttaaagactgtgccggggacattcgttaacaagacc 31042970  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 25622559 - 25622503
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 133  Q
    ||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  25622559 taattacttaatttagaatgtttaaagagtgcatcgggagcactcgttaacaagacc 25622503  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 29685785 - 29685840
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 132  Q
    |||||||||||||||| |||||||||||||| | |||  ||| |||||||||||||    
T  29685785 taattactttatttagcatgtttaaagagtgctccggaggcactcgttaacaagac 29685840  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 39647854 - 39647886
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtt 109  Q
    ||||||||| |||||||||||||||||||||||    
T  39647854 taattacttaatttagaatgtttaaagagtgtt 39647886  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 37007442 - 37007388
Alignment:
Q  78 aattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 132  Q
    |||||||| |||||||||||||||||| || |||||||||| ||| |||||||||    
T  37007442 aattacttaatttagaatgtttaaagaatgcttcgggagcactcgataacaagac 37007388  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 39932760 - 39932813
Alignment:
Q  79 attactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 132  Q
    |||||||  ||||||||||||||||||||||||||  | |||||||||||||||    
T  39932760 attacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 29612045 - 29611989
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 133  Q
    |||||||||  |||||||||||||||||||||  |||| ||| ||||||||||||||    
T  29612045 taattacttattttagaatgtttaaagagtgtcccgggggcactcgttaacaagacc 29611989  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 9762811 - 9762774
Alignment:
Q  94 atgtttaaagagtgtttcgggagcattcgttaacaaga 131  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  9762811 atgtttaaagagtgtttcgggggcactcgttaacaaga 9762774  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 44452123 - 44452176
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 132  Q
    ||||||||| |||||||||||||||||||||  || || ||| |||||||||||||    
T  44452123 taattacttaatttagaatgtttaaagagtg--tctggggcactcgttaacaagac 44452176  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 37461553 - 37461609
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 133  Q
    ||||||||| |||||| ||||||||||||||  ||||   |||||||||||||||||    
T  37461553 taattacttaatttagcatgtttaaagagtgcctcggattcattcgttaacaagacc 37461609  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 52650771 - 52650827
Alignment:
Q  77 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 133  Q
    ||||| ||| |||||| |||||||||||||||| |||  ||| ||||||||||||||    
T  52650771 taatttcttaatttagcatgtttaaagagtgttccggaggcactcgttaacaagacc 52650827  T

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