View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_27 (Length: 251)
Name: NF1453_low_27
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 1008002 - 1008134
Alignment:
| Q |
103 |
gtggatatcaactacgcgcacagtcagataacaatatttctctttacattttcattatattatttctcgtgttaaattaactttatatttagctcttgaa |
202 |
Q |
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| T |
1008002 |
gtggatatcaactacgcgcacagtcggataacaatatttctctttacattttcattatattatttctcgtgttaaattaactttatatttagctcttcaa |
1008101 |
T |
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| Q |
203 |
catattactacaagagtctaacaagccgacctt |
235 |
Q |
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| T |
1008102 |
catattactacaagagtctaacaagccgacctt |
1008134 |
T |
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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1007894 - 1007976
Alignment:
| Q |
1 |
tcaattctgagccaaacattacttatcttctgaccgaactttggattacgcctacttctcctaggaatagaaggttaccacac |
83 |
Q |
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| T |
1007894 |
tcaattctgagccaaacattacttatcttttgaccgaactttggattacgcctacttctcctaggaatagaaggttaccacac |
1007976 |
T |
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