View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_3 (Length: 397)
Name: NF1453_low_3
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 38591694 - 38591344
Alignment:
| Q |
16 |
attgaattgtttttgtattcttaactctcaataggactggtttttaaattacattgattgatagagtggggttcggttttgtgtattgagtttcatcaac |
115 |
Q |
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| T |
38591694 |
attgaattgtttttgtattcttaactctcaataggactggtttttaaattacattgattgatagagtggggttcggttttgtgtattgagtttcatcaac |
38591595 |
T |
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| Q |
116 |
ttcgtttgtcttgatagcatgattctgatatgcatttgttattggttatatttattctactacattgatataagcnnnnnnntacactattataaaccat |
215 |
Q |
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| T |
38591594 |
ttcgtttgtcttgatagcatgattctgatatgcatttgttattggttatatttattctactacattgatataagcaaaaaaatacactattataaaccat |
38591495 |
T |
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| Q |
216 |
atacatcattgatttaaagtagaaatgcaa-------------ttttggttgcaaacttgcaatgattttaacttaattggttcgtgctttattgtctct |
302 |
Q |
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| T |
38591494 |
atacatcattgatttaaagtagaaatgcaattaagtaggtaacttttggttgcaaacttgcaatgattttaacttaattggttcgtgctttattgtctct |
38591395 |
T |
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| Q |
303 |
agctaatttaagaagttctgaattttcatcataaaatgcttgaatattgca |
353 |
Q |
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| T |
38591394 |
agctaatttaagaagttctgaattctcatcataaaatgcttgaatattgca |
38591344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 38591328 - 38591285
Alignment:
| Q |
349 |
ttgcacatacaaaagtcacggcaattgcatattccgagtctgtg |
392 |
Q |
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| T |
38591328 |
ttgcacatacaaaagtcacggcaattgcatattccgagtctgtg |
38591285 |
T |
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