View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_31 (Length: 247)
Name: NF1453_low_31
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_31 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 51168187 - 51167955
Alignment:
| Q |
9 |
gaataatatgatcttgtaaccataatatatttaggatcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaa |
108 |
Q |
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| T |
51168187 |
gaataacatgatcttgtaacaataatatatttaggatcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaa |
51168088 |
T |
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| Q |
109 |
actataagctttaacattggaatttgaaagttgaccattgatgatatcacacctaaaagacattggtttgtaactgaataaacttggcatggtaaaatga |
208 |
Q |
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| T |
51168087 |
actagaagctttaacattggaatttgaaagttgaccattgatgatatcacacctaaaggacattggtttgtaactgaataaacttggcatggtaaaatga |
51167988 |
T |
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| Q |
209 |
aaaattcaaattaactgcaaaattacttgtaac |
241 |
Q |
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| T |
51167987 |
aaaattcaaattaactgcacaattacttgtaac |
51167955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 1042 - 814
Alignment:
| Q |
19 |
atcttgtaaccataatatatttaggatcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactataa--- |
115 |
Q |
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| T |
1042 |
atcttgtaacaataatattggtatgctcaaaataataatcatatagcattgccaacaaaataataataccaatacctcttaatcaaccaaactagaacta |
943 |
T |
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| Q |
116 |
---gctttaacattggaatttgaaagttgaccattgatgatatcacacctaaaagacattggtttgtaactgaataaacttggcatggtaaaatgaaaaa |
212 |
Q |
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| T |
942 |
gaagctttaacactggaatttgaacgctgaccattgataatatcacacctaaaagacattggtttgtcactgaatcaacttaacatggtaaaatgaaaaa |
843 |
T |
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| Q |
213 |
ttcaaattaactgcaaaattacttgtaac |
241 |
Q |
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| T |
842 |
ttcaagctaattgcataattacttgtaac |
814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 66079 - 65959
Alignment:
| Q |
120 |
taacattggaatttgaaagttgaccattgatgatatcacacctaaaagacattggtttgtaactgaataaacttggcatggtaaaatgaaaaattcaaat |
219 |
Q |
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| T |
66079 |
taacattggaatttgaaa-ttgaccattgatgatatcacacctaaaagacattggtttgtaattgaataaacttggcatggtaaaatgaaaaattcaaat |
65981 |
T |
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| Q |
220 |
taactgcaaaattacttgtaac |
241 |
Q |
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| T |
65980 |
taactgcacagttacttgtaac |
65959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 753008 - 753111
Alignment:
| Q |
16 |
atgatcttgtaaccataatatatttaggatcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactataa |
115 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
753008 |
atgatcttgtaacaataatatatttaggatcaaaattataattgtatagcattaccagcaaaacaataacaacaatacctcttaatcaaccaaactagaa |
753107 |
T |
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| Q |
116 |
gctt |
119 |
Q |
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|||| |
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| T |
753108 |
gctt |
753111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 850501 - 850398
Alignment:
| Q |
16 |
atgatcttgtaaccataatatatttaggatcaaaataataattgtatagcattgccagcaaaacaataacaacaatacctcttaatcaaccaaactataa |
115 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
850501 |
atgatcttgtaacaataatatatttaggatcaaaattataattgtatagcattaccagcaaaacaataacaacaatacctcttaatcaaccaaactagaa |
850402 |
T |
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| Q |
116 |
gctt |
119 |
Q |
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|||| |
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| T |
850401 |
gctt |
850398 |
T |
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