View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_33 (Length: 236)
Name: NF1453_low_33
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1007777 - 1007558
Alignment:
| Q |
1 |
acaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaac |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1007777 |
acaagcagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaactgtgcaaagactaactttaaaaacactaaaac |
1007678 |
T |
|
| Q |
101 |
atgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactgagcagtctctaaaacagtttatacatggagttagtttggttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
1007677 |
atgattaagcttgcatattaacaaactacttaaccctatgaatccctcgcttaaactgagcagtctctaaaacaatttatacagggagttagtttggttc |
1007578 |
T |
|
| Q |
201 |
tttcaagctatccataatgc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
1007577 |
tttcaagctatccataatgc |
1007558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20545809 - 20545590
Alignment:
| Q |
1 |
acaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaac |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
20545809 |
acaagtaatagtcacctatttatagacaaggtaacaaaacaactaagctagtttgcaccacaagcaaatgtgcaaagactaactctaaaaacactaaaac |
20545710 |
T |
|
| Q |
101 |
atgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactgagcagtctctaaaacagtttatacatggagttagtttggttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20545709 |
atgattaagcttgcatattaacaaactacttaaccataacaatccctcccttaaactgagcagtctctaaaacagtttatacaaggagttagtttggttc |
20545610 |
T |
|
| Q |
201 |
tttcaagctatccataatgc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
20545609 |
tttcaagctatccataatgc |
20545590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 20541471 - 20541334
Alignment:
| Q |
1 |
acaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||| |
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| T |
20541471 |
acaagtagtagtcacctatttatagacaaggtaacaaaacaactaagctagcttgcaccagaagcaactgtgcaaagacaaactctaaaaacactaaaac |
20541372 |
T |
|
| Q |
101 |
atgattaagcttgcatattaacaaactacttaacccta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
20541371 |
atgattaagcttgcatattaacaaactacttaacccta |
20541334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40609510 - 40609727
Alignment:
| Q |
1 |
acaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaac |
100 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||| |
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|
| T |
40609510 |
acaagtaatagtcacctatttataga-aaggtaacaaagcaactaagctagcttgcaccacaagcaattgtgcaaagattaacct-aaaagcactaaaac |
40609607 |
T |
|
| Q |
101 |
atgattaagcttgcatattaacaaactacttaaccctatgaatctctcccttaaactgagcagtctctaaaacagtttatacatggagttagtttggttc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| |
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|
| T |
40609608 |
atgattaagcttgcatattatcaaactacttaaccctaacaatccctcccctaaactgagcaatctctgaaacagtttatacaaggagttagtttggttc |
40609707 |
T |
|
| Q |
201 |
tttcaagctatccataatgc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
40609708 |
tttcaagctatccataatgc |
40609727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 40613863 - 40613971
Alignment:
| Q |
28 |
aaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaacatgattaagcttgcatattaacaaact |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||| | |||| |||||| |
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|
| T |
40613863 |
aaggtaacaaagcaactaagctagcttgcaccacaagcaattgtgcaaagattaacct--acaacactaaaacatgattaagcttgtacattatcaaact |
40613960 |
T |
|
| Q |
128 |
acttaacccta |
138 |
Q |
| |
|
||||||||||| |
|
|
| T |
40613961 |
acttaacccta |
40613971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13754700 - 13754563
Alignment:
| Q |
1 |
acaagtagtagtcacctatttataaacaaggtaacaaaacaactaagctagcttgcaccacaagcaattgtgcaaagactaactttaaaaacactaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
13754700 |
acaagtagtagtcacctatttatagacaaggtaacaaaacaactaagctagcttgcaccacaagcaactgtgcaaagactaactttaaaaacactaaaac |
13754601 |
T |
|
| Q |
101 |
atgattaagcttgcatattaacaaactacttaacccta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13754600 |
atgattaagcttgcatattaacaaactacttaacccta |
13754563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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