View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_4 (Length: 392)
Name: NF1453_low_4
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 47048160 - 47048558
Alignment:
| Q |
1 |
ggtagagagaatggtgggaagaagagtgattctgttatgttttcgttgggtttgacagttggtggtcctgttgttttgaaagttcctgggagttatcccg |
100 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47048160 |
ggtagagagaatggcgggaagaagactgattctgttatgttttcgttgggtttgacagttggtggtcctgttgttttgaaagttcctgggagttatcccg |
47048259 |
T |
|
| Q |
101 |
gtagcattggttttaactcgaatggttctgtttatcttgatggtaagtaattattcactttcctcgagtttatcgttttcaagatcattcatgtagtagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47048260 |
gtagcattggttttaactcgaatggttctgtttatcttgatggtaagtaattattcactttcctcgagtttatcgttttcaagatcattcatgtagtagc |
47048359 |
T |
|
| Q |
201 |
attttagcagagacattgattctgtttgaactgaaatatttgagcttatctccagttgtaaacttgtgagatcgtttggg-------------------- |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47048360 |
attttagcagagacattgattctgtttgaactgaaatatttgagcttatctccagttgtaaacttgtgagatcgtttgggagaacttataggtataggtt |
47048459 |
T |
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| Q |
281 |
aataacctcatgttatcagttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaacatttatgttattag |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47048460 |
aataacctcatgttatcagttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaacatttatgttattag |
47048558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 34290309 - 34290246
Alignment:
| Q |
300 |
ttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaa |
364 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || ||||| | |||| || |||||| |
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| T |
34290309 |
ttatgacatattcataagttgttt-tcagcttattttcataagttcttcaagatagcttatgaaa |
34290246 |
T |
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