View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1453_low_5 (Length: 387)
Name: NF1453_low_5
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_5 |
 | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 32481471 - 32481109
Alignment:
| Q |
16 |
cactcactatttctactgaaatatttgagtttgctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32481471 |
cactcactatttctactgaaatatttgagtttgctccatctttctatttggttgagataaagaagtacagtggcgatgcatcggaataccagaagatatt |
32481372 |
T |
|
| Q |
116 |
gaaggagcatataataccagctctcaaagatatcgtctggatttggcaaagtgagnnnnnnncacaacactagccagccggtgtccagtcctgaagaggt |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32481371 |
gaaggagcatataataccagttctcaaagatatcatctggatttggcaaagtgagaaaaaaacacaacactagccagccggtgtccagtcctgaagaggt |
32481272 |
T |
|
| Q |
216 |
tctttgatttgaaattttgaattgcttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagttttgtgt |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32481271 |
tcattgatttgaaattttgaattgcttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagtcttgtgt |
32481172 |
T |
|
| Q |
316 |
ccttgtaatatact-ttttctttggtattagtccttgaataaggcttatttgattgttctgtg |
377 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32481171 |
acttgtaatatacttttttctttggtattagtccttgaataaagcttatttgattgttctgtg |
32481109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 12728326 - 12728212
Alignment:
| Q |
56 |
tttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaaggagcatataataccagctctcaaagatatcgtctgg |
155 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | |
|
|
| T |
12728326 |
tttctattttgttgagataatgaagtaccatggagatgcatcggaataccagaagatattgaaggaacatataataccagctctcaaagacattgtctag |
12728227 |
T |
|
| Q |
156 |
atttggcaaagtgag |
170 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12728226 |
atttggcaaagtgag |
12728212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 46970985 - 46971131
Alignment:
| Q |
24 |
atttctactgaaatatttgagtttgctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaaggagc |
123 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |||||| ||| ||||||||| |||| ||||||| ||| ||||| ||||||||||| || | |
|
|
| T |
46970985 |
atttctgctgaaatattcgagtttgctccatctttctttttggtcgagttaaagaagtcgtgtggtgatgcattggactaccataagatattgaatgaac |
46971084 |
T |
|
| Q |
124 |
atataataccagctctcaaagatatcgtctggatttggcaaagtgag |
170 |
Q |
| |
|
| |||| |||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
46971085 |
acataagaccagctctcaaagatattgtttggatttggcatagtgag |
46971131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 46972124 - 46972196
Alignment:
| Q |
48 |
gctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaagg |
120 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||| ||||||||| | || || ||||||||||||| |
|
|
| T |
46972124 |
gctccgtctttttatttggttgagataaagaagtcttgtggtgatgcatcgaactaacataagatattgaagg |
46972196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13212 - 13254
Alignment:
| Q |
128 |
aataccagctctcaaagatatcgtctggatttggcaaagtgag |
170 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
13212 |
aataccagctctcaaagacattgtctggatttggcaaagtgag |
13254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University