View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1453_low_6 (Length: 372)

Name: NF1453_low_6
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1453_low_6
NF1453_low_6
[»] chr2 (4 HSPs)
chr2 (110-357)||(40990769-40991017)
chr2 (1-110)||(40991346-40991455)
chr2 (134-198)||(37983542-37983606)
chr2 (260-314)||(36400480-36400534)
[»] chr1 (6 HSPs)
chr1 (136-357)||(10608114-10608335)
chr1 (195-357)||(31040540-31040702)
chr1 (272-348)||(5413219-5413295)
chr1 (279-336)||(31403964-31404021)
chr1 (277-312)||(10491303-10491338)
chr1 (143-192)||(31040898-31040947)
[»] chr6 (1 HSPs)
chr6 (136-357)||(9242938-9243159)
[»] chr3 (4 HSPs)
chr3 (136-348)||(13703028-13703240)
chr3 (141-357)||(11874258-11874474)
chr3 (272-340)||(55426312-55426380)
chr3 (278-314)||(36730631-36730667)
[»] chr4 (3 HSPs)
chr4 (278-318)||(11581317-11581357)
chr4 (272-336)||(32152733-32152797)
chr4 (272-348)||(54824860-54824936)
[»] chr8 (2 HSPs)
chr8 (136-198)||(31419599-31419661)
chr8 (272-348)||(19297891-19297967)
[»] chr7 (1 HSPs)
chr7 (268-318)||(35768972-35769022)
[»] scaffold0011 (1 HSPs)
scaffold0011 (272-313)||(218212-218253)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 110 - 357
Target Start/End: Complemental strand, 40991017 - 40990769
Alignment:
Q  110 acgaacaaaacagataacagtta-catttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaagttcacctgc 208  Q
    |||||||||||| ||||||| || || |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||    
T  40991017 acgaacaaaacaaataacagataacagttacatgtggacacccatacaaaggagtggatgtttccaccaatcgtaataactatagctaaagttcacttgc 40990918  T
Q  209 tttgctttcaactaaagaaaagagtgttgttgaaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggttattcctctccttcc 308  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40990917 tttgctttcaaccaaagaaaagagtgttgttgaaccttgtctataagcgtagaagggttggttactgcattttggaatacacggttattcctctccttcc 40990818  T
Q  309 aaatcatccagacggaagtaaaccaaataattttaaagaacacataagt 357  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40990817 aaatcattcagacggaagtaaaccaaataattttaaagaacacataagt 40990769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40991455 - 40991346
Alignment:
Q  1 cttcgaggcgattacattcgtatctcagaactttaatttgagatttttgttctaagacaaggatctagatttgtttcttaattttcccttggtcttgaga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40991455 cttcgaggcgattacattcgtatttcagaactttaatttgagatttttgttctaagacaaggatctagatttgtttcttaattttcccttggtctcgaga 40991356  T
Q  101 cactttggca 110  Q
    || |||||||    
T  40991355 caatttggca 40991346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 37983542 - 37983606
Alignment:
Q  134 atttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaa 198  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||||||| |  ||||||||| ||||    
T  37983542 atttacacgtggacactcatacaaaggagaggatgtttccaccaatcatgataactatagctaaa 37983606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 36400480 - 36400534
Alignment:
Q  260 gaagggttggttaccgcattttggaatacacggttattcctctccttccaaatca 314  Q
    ||||| |||| || || ||||||||||||||| ||||||||||||||||| ||||    
T  36400480 gaaggattggatatcgtattttggaatacacgattattcctctccttccatatca 36400534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 357
Target Start/End: Complemental strand, 10608335 - 10608114
Alignment:
Q  136 ttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaagttcacctgctttgctttcaactaaagaaaagagtgt 235  Q
    |||||||| ||||| |||| ||| ||| ||||||||||||||||| || ||||||||  |||| ||||| ||||||||||||||| ||||||| ||  ||    
T  10608335 ttacatgtagacacccatacaaaagagcggatgtttccaccaatcataataactataactaaaattcacatgctttgctttcaaccaaagaaatgaaagt 10608236  T
Q  236 tgttgaaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaa 335  Q
    || | ||||||||| |  |   |||||||  | |||||||||||||||||||||||||| |||||||| ||||||||||  || |||| |||||||||||    
T  10608235 tgcttaaccttgtcaaagagaatagaaggaatagttaccgcattttggaatacacggttgttcctctctttccaaatcactcacacggtagtaaaccaaa 10608136  T
Q  336 taattttaaagaacacataagt 357  Q
    ||||||||||||| ||||||||    
T  10608135 taattttaaagaagacataagt 10608114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 31040702 - 31040540
Alignment:
Q  195 taaagttcacctgctttgctttcaactaaagaaaagagtgttgttgaaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggtt 294  Q
    |||| ||||| |||||| |||||||| |||||||||| ||||||| ||| ||||  || |   ||||||| || ||||||| |||||||||||  |||||    
T  31040702 taaaattcacgtgctttactttcaaccaaagaaaagaatgttgtttaactttgttgatgacaatagaaggatttgttaccgtattttggaatattcggtt 31040603  T
Q  295 attcctctccttccaaatcatccagacggaagtaaaccaaataattttaaagaacacataagt 357  Q
     ||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||    
T  31040602 gttcctctccttccaaatcacccacagggaagtaaaccaaataattttaaagaatacataagt 31040540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 5413219 - 5413295
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaataattttaaagaa 348  Q
    |||| ||||||||| |||||||||||||| |||||||||| || ||| || |||| ||||||||| ||||| |||||    
T  5413219 accgaattttggaagacacggttattcctttccttccaaaacacccaaacagaagcaaaccaaatgattttcaagaa 5413295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 31404021 - 31403964
Alignment:
Q  279 tttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaat 336  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||  | |||||||||    
T  31404021 tttggaatacgcggttattcctatccttccaaatcatccaaacggttgcaaaccaaat 31403964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 10491338 - 10491303
Alignment:
Q  277 attttggaatacacggttattcctctccttccaaat 312  Q
    |||||||||||||||||||||||| |||||||||||    
T  10491338 attttggaatacacggttattcctttccttccaaat 10491303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 31040947 - 31040898
Alignment:
Q  143 tggacacacatataaaggagtggatgtttccaccaatcgtagtaactata 192  Q
    ||||||| |||| ||||||| ||||||||||||||| |||| ||||||||    
T  31040947 tggacacccatacaaaggagcggatgtttccaccaaacgtaataactata 31040898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 9242938 - 9243159
Alignment:
Q  136 ttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaagttcacctgctttgctttcaactaaagaaaagagtgt 235  Q
    ||||| |||||||| |||| ||||||| |||||||||||||||||||| ||||||||  |||  ||||||| ||||||||||||| |||||||||| |||    
T  9242938 ttacacgtggacactcatacaaaggagcggatgtttccaccaatcgtaataactataactaatattcaccttctttgctttcaaccaaagaaaagaatgt 9243037  T
Q  236 tgttgaaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaa 335  Q
    || | |||  |||| || |   ||||||| || ||||||| |||||||||||  | ||| ||||||||||| ||||| | ||| || |||||||||||||    
T  9243038 tgcttaactatgtcgatgagaatagaaggatttgttaccgtattttggaatattcagttgttcctctcctttcaaattacccacacagaagtaaaccaaa 9243137  T
Q  336 taattttaaagaacacataagt 357  Q
    ||||||||||||| ||||||||    
T  9243138 taattttaaagaatacataagt 9243159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 348
Target Start/End: Original strand, 13703028 - 13703240
Alignment:
Q  136 ttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaagttcacctgctttgctttcaactaaagaaaagagtgt 235  Q
    |||||||||||||| |||| | ||||| |||| |||||| ||||| || ||||||||  |||| ||||||||||||||||||||| |||||||||| |||    
T  13703028 ttacatgtggacacccatacataggagcggatatttccatcaatcataataactataactaaaattcacctgctttgctttcaaccaaagaaaagaatgt 13703127  T
Q  236 tgttgaaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaa 335  Q
    |||| ||| | ||| ||||   ||||||| || ||||||| |||||  || |  ||||| ||||| ||||||||||||| ||| ||||||||||||||||    
T  13703128 tgtttaacttagtcgataagaatagaaggatttgttaccgtattttaaaaaattcggttgttcctttccttccaaatcacccacacggaagtaaaccaaa 13703227  T
Q  336 taattttaaagaa 348  Q
    |||||||||||||    
T  13703228 taattttaaagaa 13703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 11874258 - 11874474
Alignment:
Q  141 tgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaagttcacctgctttgctttcaactaaagaaaagagtgttgttg 240  Q
    ||||||||| |||| ||||||| |||||||||||||||||||| ||  ||||  |||| ||||| ||||||||||||||| |||||||||| ||||| |     
T  11874258 tgtggacacccatacaaaggagcggatgtttccaccaatcgtaataggtataactaaaattcacttgctttgctttcaaccaaagaaaagaatgttgctt 11874357  T
Q  241 aaccttgtctataaacgtagaagggttggttaccgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaataatt 340  Q
    ||| ||||| ||||  ||| |||| || ||||| | |||||| || |  ||||| ||||||||||||||||||| ||| ||  || |||||||||||| |    
T  11874358 aactttgtcgataagagtacaaggatttgttactgtattttgaaaaattcggttgttcctctccttccaaatcacccacacaaaactaaaccaaataact 11874457  T
Q  341 ttaaagaacacataagt 357  Q
    |||||||| ||||||||    
T  11874458 ttaaagaatacataagt 11874474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 55426312 - 55426380
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaataatt 340  Q
    ||||||||||| || |||| ||| |||||||||||||| ||||||||  | |||| |||||||||||||    
T  55426312 accgcattttgaaaaacacagttgttcctctccttccatatcatccaagcagaagcaaaccaaataatt 55426380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 36730631 - 36730667
Alignment:
Q  278 ttttggaatacacggttattcctctccttccaaatca 314  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  36730631 ttttggaatacacggtaattcctctctttccaaatca 36730667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 11581317 - 11581357
Alignment:
Q  278 ttttggaatacacggttattcctctccttccaaatcatcca 318  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  11581317 ttttggaatacacagttattcctttccttccaaatcatcca 11581357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 32152733 - 32152797
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaat 336  Q
    |||||||| | |||||| ||||| |||||||||||||| |||| ||| || |||| |||||||||    
T  32152733 accgcattattgaatactcggttgttcctctccttccacatcacccaaacagaagcaaaccaaat 32152797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 54824860 - 54824936
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaataattttaaagaa 348  Q
    |||| ||||||||| |||||||||||||| |||||||| | || |||  |||| | | ||||||||||||| |||||    
T  54824860 accgtattttggaagacacggttattcctttccttccacaacacccaagcggaggcacaccaaataattttcaagaa 54824936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 31419661 - 31419599
Alignment:
Q  136 ttacatgtggacacacatataaaggagtggatgtttccaccaatcgtagtaactatagttaaa 198  Q
    ||||||| |||||| |||| ||| ||| |||||||||||||||||||| ||| |||| |||||    
T  31419661 ttacatgcggacacccatacaaaagagcggatgtttccaccaatcgtaataagtataattaaa 31419599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 19297967 - 19297891
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatcatccagacggaagtaaaccaaataattttaaagaa 348  Q
    |||| ||||||||| |||||||||||||| |||||||| | || |||  |||| | | ||||||||||||| |||||    
T  19297967 accgtattttggaagacacggttattcctttccttccacaacacccaagcggaggcacaccaaataattttcaagaa 19297891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 35768972 - 35769022
Alignment:
Q  268 ggttaccgcattttggaatacacggttattcctctccttccaaatcatcca 318  Q
    |||||||| ||||||||||| |||||| ||||| || ||||||||||||||    
T  35768972 ggttaccgtattttggaatatacggttgttcctttctttccaaatcatcca 35769022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 218253 - 218212
Alignment:
Q  272 accgcattttggaatacacggttattcctctccttccaaatc 313  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  218253 accgtattttgaaaaacacggttattcctctccttccaaatc 218212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University