View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_7 (Length: 357)
Name: NF1453_low_7
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 2574913 - 2575238
Alignment:
| Q |
14 |
cagttagattaatccaacaaatatgattaagatagaatccaagttgtgtgtgttannnnnnnnnnnnn--aaaccttattgatgtcatggacaaaattgt |
111 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2574913 |
cagttagattaatccaacaaatttgatcaagatagaatccaagttgtgtgtgttaagagagagagagagaaaaccttattgatgtcatggacaaaattgt |
2575012 |
T |
|
| Q |
112 |
tgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2575013 |
tgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaa |
2575112 |
T |
|
| Q |
212 |
accaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttcttaacaatgtaaacatttttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2575113 |
accaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttcttaacaatgtaaacatttttc |
2575212 |
T |
|
| Q |
312 |
tgatcaccaccacccatttggcttgt |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
2575213 |
tgatcaccaccacccatttggcttgt |
2575238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 83 - 331
Target Start/End: Original strand, 2603000 - 2603248
Alignment:
| Q |
83 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
182 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2603000 |
aaccttattgatgtcatgaacaaaattgttgtttgatgtgccagaagcaccaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
2603099 |
T |
|
| Q |
183 |
gatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2603100 |
gatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttct |
2603199 |
T |
|
| Q |
283 |
ttttcttcttaacaatgtaaacatttttctgatcaccaccacccatttg |
331 |
Q |
| |
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||||||| | |||| ||||||||||||||||||||||||||||||| |
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|
| T |
2603200 |
ttttcttaacattaatggaaacatttttctgatcaccaccacccatttg |
2603248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 83 - 328
Target Start/End: Complemental strand, 2429527 - 2429282
Alignment:
| Q |
83 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
182 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| | ||| || |||||||||| ||||| || |
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|
| T |
2429527 |
aaccttattgacatcatggacaaaattgctgcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggacc |
2429428 |
T |
|
| Q |
183 |
gatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttct |
282 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
2429427 |
atcatgccatcaccaatagccccaaaaaaaccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttct |
2429328 |
T |
|
| Q |
283 |
ttttcttcttaacaatgtaaacatttttctgatcaccaccacccat |
328 |
Q |
| |
|
||||||| | | |||| |||||||||||||||||||||||||||| |
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|
| T |
2429327 |
ttttcttatcattaatggaaacatttttctgatcaccaccacccat |
2429282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 2679723 - 2679972
Alignment:
| Q |
82 |
aaaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaac |
181 |
Q |
| |
|
|||||| |||||||| ||| ||||||||| ||||||||| ||||||| | |||||||||||||||||| ||||| || |||||||| | ||||||| |
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|
| T |
2679723 |
aaacctcattgatgttatgtacaaaattggtgcttgatgagccagaaatagtaccaatagagttcataattctgcttgtgataaacaaaaccaaaggagt |
2679822 |
T |
|
| Q |
182 |
tgatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttc |
281 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||| ||| ||||||||||||||||| |
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|
| T |
2679823 |
cattagtccatcaccaatggcaccaatcaaaccaaaagccatgaaaaaacaatcaagaacatcagcatgcatgaaaatggacctaaaagaaccatttttc |
2679922 |
T |
|
| Q |
282 |
tttttcttcttaacaatgtaaacatttttctgatcaccaccacccatttg |
331 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||||||||| |
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|
| T |
2679923 |
tttttcttaacattaatggaaacatttttctgatcaccaccacccatttg |
2679972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 329
Target Start/End: Original strand, 2647278 - 2647527
Alignment:
| Q |
83 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
182 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||| || |||||||| | ||||||| |
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|
| T |
2647278 |
aacctcatagatgttatggacaaaattgttgcttgatgtgccagaaatagtaccaatagagttcataagtttgcttgagataaacaaaagcaaaggagtc |
2647377 |
T |
|
| Q |
183 |
gatatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttct |
282 |
Q |
| |
|
||| ||||||||||||| |||| |||||||||| |||| || || ||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
2647378 |
attattccatcaccaatggctccaaacaaaccaaaagccattaagaaacaatcaagaacatcagcatgcatgaaaatggacttaaaagaaccatttttct |
2647477 |
T |
|
| Q |
283 |
ttttcttcttaac---aatgtaaacatttttctgatcaccaccacccatt |
329 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |||||||||| |
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|
| T |
2647478 |
ttttcttcttaacattaatggaaacatttttctgatcactaccacccatt |
2647527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 2615554 - 2615433
Alignment:
| Q |
189 |
ccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttct |
288 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
2615554 |
ccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttct |
2615455 |
T |
|
| Q |
289 |
tcttaacaatgtaaacattttt |
310 |
Q |
| |
|
| | | |||| |||||||||| |
|
|
| T |
2615454 |
tatcattaatggaaacattttt |
2615433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 331
Target Start/End: Complemental strand, 2445843 - 2445697
Alignment:
| Q |
185 |
tatgccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttcttt |
284 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2445843 |
tatgccatcaccaatagccccaaatgaaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttcttt |
2445744 |
T |
|
| Q |
285 |
ttcttcttaacaatgtaaacatttttctgatcaccaccacccatttg |
331 |
Q |
| |
|
||||| | ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2445743 |
ttcttaacattaatagaaacatttttctgctcaccaccacccatttg |
2445697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 2425913 - 2425857
Alignment:
| Q |
264 |
ttaaaagaaccatttttctttttcttcttaac---aatgtaaacatttttctgatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
2425913 |
ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca |
2425857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 2583142 - 2583068
Alignment:
| Q |
82 |
aaaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgc |
156 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||| ||||| |
|
|
| T |
2583142 |
aaacctcattgatgttatggacaaaattgttctttgatgggccagaaatagaaccaatagagttcataattctgc |
2583068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 2602923 - 2602971
Alignment:
| Q |
12 |
aacagttagattaatccaacaaatatgattaagatagaatccaagttgt |
60 |
Q |
| |
|
|||||||||||||||| |||| || | ||||| |||||||||||||||| |
|
|
| T |
2602923 |
aacagttagattaatctaacagattttattaaaatagaatccaagttgt |
2602971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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