View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1453_low_8 (Length: 353)
Name: NF1453_low_8
Description: NF1453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1453_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 37 - 339
Target Start/End: Original strand, 1402798 - 1403093
Alignment:
| Q |
37 |
gaggcatgtatttggggtgtgaattaaatttaacaacttacctatggacttggcgtgaagttttagtttaattgttattttaggaatttcaacaagtgct |
136 |
Q |
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| T |
1402798 |
gaggcatgtatttggggtgtgaattaaatttaacagcttacctatggacttggcgttaagttttagtttaattgttttttt-ggaatttcaacaagtgct |
1402896 |
T |
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| Q |
137 |
ttgtattgtgcagtttattttttctccctttcagttattttttattatgactatataaatgcacacggcccatttattgtgatggcacaagttttattgg |
236 |
Q |
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| T |
1402897 |
ttgtattgtgcagtttatttttgctcccttgcagttattttttattgtgactatataaatgcacacggtccatttattgtgatggcacaagttttatagg |
1402996 |
T |
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| Q |
237 |
aaactaaagaatacaatttttgaggcacggacaatcattgaaaaatgttggcctacacctatagaccaactcccgtattttcacatggacaactatattg |
336 |
Q |
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| T |
1402997 |
aaactaaagaatacaaattttgaagcacggac------ttaaaaatgttggcctacacctatagaccaactcccctatttttacatggacaactatattg |
1403090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 42758896 - 42758785
Alignment:
| Q |
228 |
ttttattggaaactaaagaatacaatttttgaggcacggacaatcattgaaaaatgttggcctacacctatagaccaactcccgtattttcacatggaca |
327 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42758896 |
ttttattggaaactaaagaatacagtttttgaggcacggacagtcactgaaaaatgttggcctacacctatagaccaactcccatattttcacatggaca |
42758797 |
T |
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| Q |
328 |
actatattgttg |
339 |
Q |
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| T |
42758796 |
actatattgttg |
42758785 |
T |
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