View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14540_high_4 (Length: 321)
Name: NF14540_high_4
Description: NF14540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14540_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 10370464 - 10370162
Alignment:
| Q |
19 |
acttggagtatttcctatttgtggtaactttcttgctttcaaatatcatttacctttattgagggtattcttgtaatttaaatacttacttttgagtaag |
118 |
Q |
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| T |
10370464 |
acttggagtatttcctatttgtggtaactttcttgctttcaaatatcatttacctttattgagggtattcttgtaatttaaatacttacttttgagtaag |
10370365 |
T |
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| Q |
119 |
ttactgttgctgagattattttaaggttaattatttttctcctactttgaacaaaagtccttcaactttttagtttattgggtttgaacacgggttcttt |
218 |
Q |
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| T |
10370364 |
ttattgttactgagattattttaaggttaattatttttctcctggtttgaacaaaagtccttcaactttttagtttaatgggttttaacatgggtccttt |
10370265 |
T |
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| Q |
219 |
ttcagtttaactcttcactcaaaccagttgaattattccactaaacgtcagttttctttttgcatatgctacgaggtaggctgtccatatttctttgctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| || |
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| T |
10370264 |
ttcagtttaactcttcactcaaaccagttgaattatcctactaaacgtcagttttcttttggcatatgctatcaggtaggctatccatatttctttgttg |
10370165 |
T |
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| Q |
319 |
tgt |
321 |
Q |
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| T |
10370164 |
tgt |
10370162 |
T |
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