View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14540_high_5 (Length: 289)
Name: NF14540_high_5
Description: NF14540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14540_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 32987940 - 32988211
Alignment:
| Q |
18 |
ctatcggcaccaccagggtgatctttgatgaaacgtgtgcagtcatagatgtggccatggacaatgatccatactgattcagcgttattatgtttttcta |
117 |
Q |
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| T |
32987940 |
ctatcggcaccaccagggtgatctttgatgaaacgtgtgcagtcatagacgtggccatggacaatgatccatgctgattcagcgttattatgtttttcta |
32988039 |
T |
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| Q |
118 |
cttcagaaatggtgtaggtttttgagctagtgatcatgaagggtgaagagagactcttcttgagaattgagttagaatctgatgatttttccaactgtct |
217 |
Q |
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| T |
32988040 |
cttcagaaatggtgtaggtttttgagctagtgatcatgaagggtgaagagagactcttcttgagaattgagttagaatctgatgatttttccaactgtct |
32988139 |
T |
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| Q |
218 |
ttcttttgccatccagccacctgattggttccctggttgagttgggtgctcgaacaatattccaatttcacc |
289 |
Q |
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| T |
32988140 |
ttcttttgccatccagccacctgattggttccctggttgagttgggtgctcaaacaatattccaatttcacc |
32988211 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 32958591 - 32958656
Alignment:
| Q |
81 |
atgatccatactgattcagcgttattatgtttttctacttcagaaatggtgtaggtttttgagcta |
146 |
Q |
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| T |
32958591 |
atgatccaagctgaatcagagttattatgttttttcacttcaaacatggtgtatgtttttgagcta |
32958656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 286
Target Start/End: Original strand, 24862069 - 24862247
Alignment:
| Q |
108 |
tgtttttctacttcagaaatggtgtaggtttttgagctagtgatcatgaagggtgaagagagactcttcttgagaattgagttagaatctgatgattttt |
207 |
Q |
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| T |
24862069 |
tgttttttaacttcagaaagggagtatgtttttgaagaagtgttcatgaatggagtagagatacttttcttgagaattggtttggtttcttgtgatcttt |
24862168 |
T |
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| Q |
208 |
ccaactgtctttcttttgccatccagccacctgattggttccctggttgagttgggtgctcgaacaatattccaatttc |
286 |
Q |
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| T |
24862169 |
ctaagtgtctttcctttgccatccaaccacctgattggttacctggttgtgttggatgttcaaacactatgccaatttc |
24862247 |
T |
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