View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14540_low_3 (Length: 433)
Name: NF14540_low_3
Description: NF14540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14540_low_3 |
 |  |
|
| [»] scaffold0341 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 47718492 - 47718092
Alignment:
| Q |
17 |
actttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47718492 |
actttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagct |
47718393 |
T |
 |
| Q |
117 |
attattttccttttattctgttcttctttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataat |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47718392 |
attattttccttttattctgttctt---tttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataat |
47718296 |
T |
 |
| Q |
217 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
47718295 |
ggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttct |
47718196 |
T |
 |
| Q |
317 |
cttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttct |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
47718195 |
cttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttct |
47718096 |
T |
 |
| Q |
417 |
tctc |
420 |
Q |
| |
|
|||| |
|
|
| T |
47718095 |
tctc |
47718092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 47713701 - 47713298
Alignment:
| Q |
17 |
actttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagct |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
47713701 |
actttcatatccaaagcttcaatcatccactacttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagct |
47713602 |
T |
 |
| Q |
117 |
attattttccttttattctgttcttctttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataat |
216 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||||| |
|
|
| T |
47713601 |
attattttccttttactcttttctcctttttattatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtataaacaataat |
47713502 |
T |
 |
| Q |
217 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47713501 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct |
47713402 |
T |
 |
| Q |
317 |
cttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713401 |
cttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttct |
47713302 |
T |
 |
| Q |
417 |
tctc |
420 |
Q |
| |
|
|||| |
|
|
| T |
47713301 |
tctc |
47713298 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 47746284 - 47745881
Alignment:
| Q |
17 |
actttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatata-cacgaatgacaactgtttctagcaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||| |
|
|
| T |
47746284 |
actttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatatcac-aatgacaattgtatctagcaagc |
47746186 |
T |
 |
| Q |
116 |
tattattttccttttattctgttcttctttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataa |
215 |
Q |
| |
|
||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47746185 |
tattattttccctttactcttttctcctttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataa |
47746086 |
T |
 |
| Q |
216 |
tggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47746085 |
tggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttc |
47745986 |
T |
 |
| Q |
316 |
tcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttc |
415 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
47745985 |
tcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttc |
47745886 |
T |
 |
| Q |
416 |
ttctc |
420 |
Q |
| |
|
||||| |
|
|
| T |
47745885 |
ttctc |
47745881 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 160 - 420
Target Start/End: Complemental strand, 47760473 - 47760213
Alignment:
| Q |
160 |
gtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaaca |
259 |
Q |
| |
|
|||||||||||| ||| |||||| ||||| || ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47760473 |
gtatctcaagccaaagcccaacctgattttctgtacaacttttgtaaaaacgataatggcaactacacagccaatagcacctatcaaaacaacctcaaca |
47760374 |
T |
 |
| Q |
260 |
cccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctg |
359 |
Q |
| |
|
|| |||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47760373 |
ccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctg |
47760274 |
T |
 |
| Q |
360 |
cagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctc |
420 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
47760273 |
tagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctc |
47760213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 377
Target Start/End: Complemental strand, 6513114 - 6512957
Alignment:
| Q |
220 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
319 |
Q |
| |
|
||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| |||||||||||||| | ||||||||||| ||||| |||| ||||| |
|
|
| T |
6513114 |
aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt |
6513015 |
T |
 |
| Q |
320 |
atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc |
377 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
6513014 |
atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc |
6512957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 6507218 - 6507051
Alignment:
| Q |
215 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
314 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
6507218 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
6507119 |
T |
 |
| Q |
315 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
6507118 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
6507051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 369
Target Start/End: Complemental strand, 6517511 - 6517364
Alignment:
| Q |
222 |
ctacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttat |
321 |
Q |
| |
|
||||||| |||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||| || | ||||||| |
|
|
| T |
6517511 |
ctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcctcttat |
6517412 |
T |
 |
| Q |
322 |
ggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat |
369 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6517411 |
ggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat |
6517364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 6521552 - 6521678
Alignment:
| Q |
250 |
aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca |
349 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| | ||||||||||| ||||| |||| ||||||||| | ||||| |||||||||||||| | |
|
|
| T |
6521552 |
aaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcga |
6521651 |
T |
 |
| Q |
350 |
ttggactctgcagaggagatgttaaac |
376 |
Q |
| |
|
||||||| || ||||||||||| |||| |
|
|
| T |
6521652 |
ttggactatgtagaggagatgtcaaac |
6521678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 6500384 - 6500263
Alignment:
| Q |
220 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
319 |
Q |
| |
|
||||||||| | |||||||||||| | || ||||||||||| |||||||| | ||||||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
6500384 |
aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac |
6500285 |
T |
 |
| Q |
320 |
atggccaaaacaccgacaaagt |
341 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
6500284 |
atggcgaaaacagcgacaaagt |
6500263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 6523572 - 6523678
Alignment:
| Q |
268 |
tccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag |
367 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||||||||| | || ||||||| ||||||||||||| ||||| || |||||||| | |
|
|
| T |
6523572 |
tccactctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg |
6523671 |
T |
 |
| Q |
368 |
atgttaa |
374 |
Q |
| |
|
||||||| |
|
|
| T |
6523672 |
atgttaa |
6523678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 47777840 - 47777937
Alignment:
| Q |
220 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctc |
317 |
Q |
| |
|
||||||||| | || |||||||| ||| ||||||||||| |||||||||| ||||| ||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
47777840 |
aactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttctc |
47777937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 47772876 - 47772983
Alignment:
| Q |
217 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttct |
316 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| || || ||||| |||| ||| |||| | || ||||||||||||| ||||||||||||| |
|
|
| T |
47772876 |
ggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
47772975 |
T |
 |
| Q |
317 |
cttatggc |
324 |
Q |
| |
|
| |||||| |
|
|
| T |
47772976 |
catatggc |
47772983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 1243 - 1076
Alignment:
| Q |
215 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
314 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
1243 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
1144 |
T |
 |
| Q |
315 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
1143 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
1076 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 8897 - 8730
Alignment:
| Q |
215 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
314 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
8897 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
8798 |
T |
 |
| Q |
315 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
8797 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
8730 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 212 - 419
Target Start/End: Complemental strand, 28862032 - 28861825
Alignment:
| Q |
212 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
311 |
Q |
| |
|
||||||||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28862032 |
ataatggcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28861933 |
T |
 |
| Q |
312 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
411 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28861932 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28861833 |
T |
 |
| Q |
412 |
gttcttct |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
28861832 |
gttcttct |
28861825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 212 - 419
Target Start/End: Complemental strand, 28856755 - 28856548
Alignment:
| Q |
212 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
311 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28856755 |
ataatagcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28856656 |
T |
 |
| Q |
312 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
411 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28856655 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28856556 |
T |
 |
| Q |
412 |
gttcttct |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
28856555 |
gttcttct |
28856548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 419
Target Start/End: Complemental strand, 28831536 - 28831352
Alignment:
| Q |
235 |
agcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccg |
334 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| ||||| || ||| || || | |
|
|
| T |
28831536 |
agcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaaca |
28831437 |
T |
 |
| Q |
335 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttct |
419 |
Q |
| |
|
|||||||| ||||||| ||| | || |||||||||||||| || ||| ||||||| || ||| || |||||||||||||||| |
|
|
| T |
28831436 |
acaaagtatacgccataggattatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttct |
28831352 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 27371881 - 27371748
Alignment:
| Q |
220 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
319 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||| || |||||| ||| || | || ||||| |||| |||| |||||||| || ||||||||||| | |
|
|
| T |
27371881 |
aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat |
27371782 |
T |
 |
| Q |
320 |
atggccaaaacaccgacaaagtaaacgccattgg |
353 |
Q |
| |
|
|||||||| || | |||||| |||| |||||||| |
|
|
| T |
27371781 |
atggccaacacccagacaaaataaaggccattgg |
27371748 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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